Detailed information of component protein


Summary

Component ID T6CP013452
Component protein type TssM
T6SS ID (Type) T6SS01037 insolico (Type i1)
Strain Dickeya zeae EC1
Replicon chromosome
Sequence Protein sequence (1166 a.a.); Nucleotide sequence (3498 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) W909_RS06420
Coordinate (Strand) 1402287..1405784 (+)
NCBI ID WP_016943517.1
RefSeq NZ_CP006929
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related PF06761.14 1.6e-77 506..819
IcmF-related_N PF14331.8 1.2e-67 201..454
IcmF_C PF06744.14 1.8e-22 1038..1144
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 1166 a.a.    

>T6CP013452 NZ_CP006929:1402287-1405784 [Dickeya zeae EC1] [TssM]
MLKIIITFLRQQLPKLKPSWLLLGVVVWVVALVLVWWLGPRLLLGEMRPLQSVWGRVVFTLVWLWLGFAYSAWRVWRRVQ
QLRAERREQQTIEQDPLQVYVDSQQTFLDRWLQAFQTQLGKKALYAMPWYLAIGLSGSGKSSLIHRANPANKLNPKLDAE
LREVAGGQQVNSWVGESAVIWDPSGHLLAQPEVGTEPSAGRHARLWQHLLQWLSLNRRRQPLNGLVLTIDLSWLSQASVS
ERKAYAQVMRARLQEIAVNINTRLPLYVALTRLDMLRGFDVVYRSLNREARQAVLGVTFTPQASHGKGWLEELERFWDEW
INSLNNNLPEMLLTQSDRGVRNTLFTFVRQLAGLKDYVTDVLNETLSTGDDRAFLVRGVYASSVYQQGVPFDAFAQSASR
RYQLPEPINAAMRGESNTFFVQKLFPEVIFPEASLAGENRLHSLYRRRRMSIGVTCMVLFGLAMIGSWHHFYRVNEEAGR
NVLTKAQAFIGTNELEGQAGYGYQQLPRLNLIRDATLSFGNYHERTPMLADLGLYQGDKIGPYVEGSYLQMLNQRFLPAV
MQGLLEDLNQAPAGSEQKLTILRVMRMLDDASGRNKTLVEQFMALRWQKAFPGQGKVQEQLMQHLDYALERTDWHQSREQ
KDTVAISTFAPFVDPIASAQRELSKLPMYQRVYQSLVMKATQVLPPDLALRDEVGPTFDSVFSLRNDKAGTVPRLLTYPG
FSDFYLKQDKTLLDLTALDAWVLGQRERAHLSEADRKEILRQVNDRYITDYINQWQKALANIDVQPLESPEQALNILTDI
TGNDQPFQRVLTTVSDNTRIRKLADDENDTAQGINTRIGRPFMTINAALSGRGEQGPLVQEVNQKLTDLYHYLDQIVNAT
DPGQAALKAVQARQGNKFADPVFALQQYARSLPSPLDRWVGQLAGESASLVTGLAMSSLNQEWLDKVVTPFNEKLADRYP
FNPSSDKDVPLSEMERFFAAGGTLDNFYQTNLKSIMEGGMLEGEGASAMQTDLVKQLDRATRIRQTLFNAQGSLEIHFVV
EPVELTANKRRSVLNLDGQLLEYSHGRRTKTPLVWPNSMRDGAESKLTLVPDDRERSPRSLSFTGPWAMFRLLTNGQLTQ
INDNTFDVRFSLEQGGMTYRVYTDASHNPFAGGLFSQFKLPDSLY*

  Nucleotide sequence: 3498 bp    

>T6CP013452 NZ_CP006929:1402287-1405784 [Dickeya zeae EC1] [TssM]
ATGTTGAAAATAATCATTACCTTTCTGCGGCAACAGCTGCCGAAACTGAAACCGTCCTGGCTGCTGTTGGGGGTGGTGGT
ATGGGTAGTCGCGTTAGTGCTGGTCTGGTGGCTGGGGCCGCGTCTGCTCCTCGGCGAGATGCGCCCACTGCAAAGCGTGT
GGGGGCGCGTGGTGTTCACGCTGGTCTGGCTGTGGCTGGGGTTTGCCTACAGCGCGTGGCGTGTCTGGCGTCGGGTACAG
CAACTGCGTGCGGAACGCCGCGAACAGCAGACTATCGAGCAAGACCCCTTGCAGGTATACGTTGATAGCCAGCAAACCTT
TCTGGACCGTTGGCTACAGGCGTTTCAAACCCAGCTCGGCAAAAAGGCGCTGTACGCTATGCCCTGGTATCTGGCGATTG
GTTTGTCCGGCAGCGGTAAAAGCAGCCTGATCCATCGTGCTAACCCGGCCAATAAGCTCAACCCGAAGCTGGATGCGGAG
TTGCGTGAAGTCGCGGGCGGCCAGCAGGTGAACAGTTGGGTCGGTGAATCAGCGGTTATCTGGGATCCGAGCGGTCACTT
GCTGGCGCAACCGGAAGTCGGCACAGAGCCGTCGGCCGGGCGTCACGCGCGTCTGTGGCAGCATTTGCTGCAATGGCTGA
GCCTCAACCGCCGTCGCCAGCCGCTGAACGGGCTGGTGCTGACTATCGACTTGTCCTGGCTGTCGCAGGCCAGTGTGTCG
GAGCGCAAGGCCTATGCGCAGGTGATGCGCGCCCGCCTGCAGGAGATAGCGGTCAACATCAATACCCGCCTGCCGCTGTA
TGTGGCGCTGACTCGTCTGGACATGCTGCGTGGTTTTGACGTGGTGTACCGGTCGCTGAACCGGGAGGCACGTCAGGCAG
TGCTCGGGGTGACCTTTACACCACAGGCCAGTCATGGCAAAGGCTGGCTGGAGGAGCTGGAACGCTTTTGGGATGAGTGG
ATCAACAGCCTTAACAATAACCTGCCGGAAATGCTGCTGACGCAGTCGGACCGCGGTGTACGCAATACGCTGTTTACCTT
CGTGCGTCAGTTGGCCGGGCTGAAGGATTACGTGACGGACGTGTTGAACGAAACACTGTCGACCGGCGACGACCGTGCAT
TTTTGGTACGCGGCGTTTACGCCAGTTCGGTGTATCAGCAAGGGGTGCCATTTGACGCCTTCGCTCAGTCCGCTTCCCGC
CGTTACCAATTACCGGAGCCGATTAATGCGGCGATGCGCGGCGAATCCAATACCTTCTTCGTACAGAAACTGTTCCCGGA
GGTGATTTTCCCGGAGGCCAGTCTGGCAGGGGAAAACCGGCTGCACAGCCTCTATCGTCGTCGCCGCATGAGCATTGGGG
TGACCTGCATGGTGCTGTTTGGGCTGGCGATGATCGGTAGCTGGCACCACTTCTACCGGGTCAACGAAGAGGCCGGTCGT
AACGTGCTGACCAAAGCGCAGGCGTTCATCGGCACCAACGAACTGGAAGGGCAGGCGGGATACGGTTACCAGCAGTTGCC
GCGTTTGAATTTGATCCGCGACGCGACCTTGTCGTTCGGTAACTACCATGAACGTACGCCGATGCTGGCGGATCTTGGCC
TGTATCAGGGCGATAAGATTGGCCCCTACGTGGAAGGTTCGTACCTGCAAATGCTTAACCAGCGCTTCTTGCCCGCGGTG
ATGCAAGGGCTGCTGGAAGACCTGAATCAGGCACCGGCGGGTAGTGAACAAAAGCTCACTATCTTGCGGGTAATGCGGAT
GCTGGACGACGCCTCCGGGCGTAACAAGACGCTGGTGGAGCAGTTTATGGCACTGCGCTGGCAGAAGGCGTTCCCCGGTC
AGGGCAAGGTGCAGGAGCAACTGATGCAGCATCTGGATTACGCATTGGAGAGGACCGACTGGCACCAGTCCCGCGAGCAA
AAGGATACGGTAGCCATCTCGACGTTTGCACCGTTTGTCGACCCGATCGCCAGTGCTCAGCGCGAGCTGAGCAAGCTGCC
GATGTACCAGCGTGTCTACCAGAGTCTGGTGATGAAGGCCACGCAGGTGCTGCCGCCGGATTTGGCGCTCCGCGACGAGG
TTGGGCCGACGTTTGACTCGGTATTTAGTTTGCGTAATGACAAGGCAGGCACCGTACCTCGCTTGTTGACCTATCCCGGT
TTCAGCGATTTTTACCTCAAGCAGGATAAGACACTGCTGGACCTGACCGCGCTGGATGCCTGGGTCTTGGGGCAGCGTGA
GCGTGCTCACCTGAGCGAGGCAGACCGTAAGGAAATTCTGCGGCAGGTGAATGACCGCTACATCACCGACTACATCAACC
AGTGGCAAAAAGCGCTGGCGAATATCGATGTGCAGCCGTTGGAAAGCCCGGAGCAGGCGTTGAACATCCTGACTGACATT
ACCGGTAATGATCAGCCGTTCCAGCGGGTGCTGACCACGGTGAGTGATAACACCCGTATCCGCAAGCTGGCGGATGACGA
GAACGACACCGCGCAAGGCATCAATACCCGTATTGGTCGTCCGTTCATGACGATTAACGCCGCGCTGAGCGGGCGGGGTG
AACAGGGGCCGCTGGTGCAGGAGGTCAATCAGAAGCTGACCGATCTCTACCACTATCTCGATCAGATTGTGAATGCGACG
GATCCGGGGCAGGCGGCGCTGAAAGCGGTGCAGGCACGTCAGGGTAACAAGTTCGCTGACCCGGTGTTTGCGTTGCAGCA
GTATGCCCGCAGCCTGCCATCGCCGCTGGATCGGTGGGTCGGCCAACTGGCGGGAGAAAGCGCCAGTCTGGTGACCGGTC
TTGCCATGTCGTCACTGAATCAGGAGTGGCTGGACAAGGTGGTGACACCGTTTAATGAAAAACTGGCGGATCGCTACCCG
TTCAACCCATCGTCTGACAAGGATGTTCCGCTCTCCGAGATGGAACGCTTCTTCGCGGCTGGCGGCACGCTGGATAACTT
CTACCAGACCAACCTCAAATCCATCATGGAAGGCGGGATGCTGGAAGGGGAAGGCGCGTCGGCAATGCAAACCGATTTGG
TGAAACAGCTTGATCGCGCGACCCGTATCCGCCAGACGCTGTTTAACGCGCAAGGCAGCCTGGAAATTCACTTTGTGGTG
GAACCGGTGGAACTGACCGCTAATAAGCGCCGCAGCGTATTGAACCTTGACGGACAGTTGTTGGAATACAGCCACGGACG
CCGGACCAAAACGCCGCTGGTGTGGCCGAACAGCATGCGTGACGGCGCTGAAAGCAAGCTGACGCTGGTGCCGGATGACC
GCGAGCGCTCGCCACGTAGCCTGAGCTTCACCGGACCGTGGGCGATGTTCCGCCTGTTGACCAACGGCCAGCTAACCCAG
ATCAACGATAATACGTTCGACGTGCGCTTCTCACTGGAACAAGGTGGCATGACCTATCGGGTGTATACCGATGCCAGCCA
TAACCCGTTTGCCGGTGGCCTGTTTAGCCAGTTCAAGCTGCCTGATTCTCTCTATTAA