SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP013451
Component protein type	TssA
T6SS ID (Type)	T6SS01037 (Type i1)
Strain	Dickeya zeae EC1
Replicon	chromosome
Sequence	Protein sequence (479 a.a.); Nucleotide sequence (1437 bp)
Reference	[1] Lv M, Hu M, Li P, et al. A two-component regulatory system VfmIH modulates multiple virulence traits in Dickeya zeae. Mol Microbiol. 2019 Jun;111(6):1493-1509. doi: 10.1111/mmi.14233. Epub 2019 Mar 28. PMID: 30825339

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	W909_RS06415
Coordinate (Strand)	1400825..1402261 (+)
NCBI ID	WP_029456599.1
RefSeq	NZ_CP006929
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VasJ	PF16989.7	5.4e-81	226..471
ImpA_N	PF06812.14	7.6e-16	21..112

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 479 a.a.

						>T6CP013451 NZ_CP006929:1400825-1402261 [Dickeya zeae EC1] [TssA]
MHAHPWCKRLLTSLPDEALRAAVAADDPLWEQVETELVKLGSLAHSQVDLNAVAGQCLTLLESRTKDMRVLVQLLRCLQH
PAKATPFATAIMLLDSWLEAYWTVAFPASPAQKQKLMVQIIRRFEGVLPRMTEQASGAELGQLHQLAEQLASRWRGLAAS
NADLTDELVAALQRARQRHQAQEKANQAAAAPTSGAQGATSAEGGTGNSGHSSTASVAATVDINSSDDRSWKQTQLTVAA
LLVERQPEAPVGYRLRRNAIWAGITTPPMAARGNKTQLAPVSADRVDEYHSALGQADLALWNKIEQSLTLAPYWFDGHML
SATVATRLGHGAVASAIADELSAFLTRLPELRELSFSDGSPFLSAKCVQWLQSAQPGRGGGGIQRQDDLAAEAAACCTEQ
GLSAALSLLDERIRRLKEPRERFLAELVLADLLAEEGMKALAAQHYQHLWQESERLGLMQWEPGMVSRLERLSASRRK*					

Nucleotide sequence: 1437 bp

						>T6CP013451 NZ_CP006929:1400825-1402261 [Dickeya zeae EC1] [TssA]
ATGCATGCACACCCCTGGTGTAAACGATTACTGACGTCATTGCCTGATGAGGCGCTGCGCGCAGCGGTAGCGGCGGATGA
CCCGCTGTGGGAGCAGGTAGAAACCGAGCTGGTCAAGTTGGGATCGCTGGCGCACAGCCAGGTGGACCTTAACGCGGTGG
CGGGTCAATGCCTGACGTTGCTGGAGAGCCGAACCAAAGACATGCGGGTGCTGGTGCAACTACTGCGTTGTCTGCAACAC
CCGGCCAAGGCGACGCCATTCGCCACCGCCATCATGTTGCTCGATAGCTGGCTGGAGGCTTACTGGACGGTGGCGTTTCC
GGCCAGTCCGGCACAAAAACAGAAGCTGATGGTGCAAATCATCCGCCGTTTTGAAGGCGTGCTGCCCCGTATGACGGAGC
AGGCCTCGGGGGCGGAATTAGGCCAGTTGCATCAGTTGGCGGAACAACTGGCTTCGCGCTGGCGTGGGCTTGCGGCCAGC
AACGCGGACCTCACCGATGAACTGGTGGCGGCGCTTCAGCGTGCCCGGCAACGCCATCAGGCGCAGGAGAAAGCCAACCA
AGCGGCGGCGGCACCGACGTCGGGCGCGCAAGGCGCAACCAGCGCGGAGGGGGGCACCGGGAACAGTGGTCACAGCAGTA
CAGCCAGTGTGGCGGCGACGGTCGATATCAACAGTTCGGACGATCGTAGCTGGAAGCAGACGCAACTGACCGTGGCGGCG
TTGCTGGTAGAACGCCAGCCGGAAGCGCCGGTGGGGTATCGCCTGCGCCGCAATGCTATCTGGGCGGGTATTACCACCCC
ACCGATGGCGGCGCGGGGTAACAAAACCCAGTTAGCGCCGGTATCGGCCGACCGGGTGGATGAGTACCACAGCGCGCTTG
GACAGGCAGATCTGGCGCTGTGGAACAAGATTGAACAGAGCCTGACGTTGGCACCGTATTGGTTTGACGGCCACATGCTG
TCAGCGACGGTAGCGACCCGGCTGGGGCATGGCGCTGTCGCCAGCGCCATCGCCGATGAACTGTCGGCGTTTCTCACCCG
GCTGCCGGAATTACGCGAGCTGTCGTTTAGCGATGGGTCGCCGTTTCTGTCGGCCAAATGCGTCCAGTGGTTGCAATCCG
CACAGCCAGGGCGGGGTGGCGGTGGCATTCAGCGACAGGACGATCTGGCGGCAGAGGCGGCGGCGTGCTGCACCGAGCAA
GGGCTGAGCGCCGCGTTGTCGCTACTGGATGAACGTATTCGACGTTTGAAAGAGCCGCGTGAGCGTTTTTTGGCCGAGCT
GGTATTGGCGGATTTACTGGCGGAAGAAGGCATGAAAGCACTGGCGGCACAGCATTATCAGCACCTGTGGCAGGAAAGCG
AGCGATTGGGCCTGATGCAGTGGGAACCGGGAATGGTCAGCCGACTGGAGCGGCTGAGCGCGTCCCGCAGGAAATAA					