Detailed information of component protein


Summary

Component ID T6CP013450
Component protein type TssH
T6SS ID (Type) T6SS01037 insolico (Type i1)
Strain Dickeya zeae EC1
Replicon chromosome
Sequence Protein sequence (867 a.a.); Nucleotide sequence (2601 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) W909_RS06400
Coordinate (Strand) 1396109..1398709 (+)
NCBI ID WP_016943513.1
RefSeq NZ_CP006929
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 2.8e-36 603..764
AAA_lid_9 PF17871.3 7.8e-29 360..451
ClpB_D2-small PF10431.11 4e-09 770..843
AAA PF00004.31 2.3e-08 220..332
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 867 a.a.    

>T6CP013450 NZ_CP006929:1396109-1398709 [Dickeya zeae EC1] [TssH]
VIRIELPILVERLNPLCRHMMEEAAALCIQHQGAEIRIEHLLLKMLETPLCDVRQILKRAGVEADELAALLQPNAADKGF
ESGYPSFSPLLVEWLQDSWLLASAELQHARLRSGVLLLVLLMTPTRYLSAAVTRQLAQINRELLRQQFDEWVKDSAETEV
VTATGIAPEQAAAATTQLSRYTQNVTESARQGKLDPVLCRDHEIDLMIDILSRRRKNNPIVVGEAGVGKSALIEGLALRI
VAGLVPERLRDVELLTLDLGAMQAGASVKGEFEKRFKGVMQEVKEAPKPIVLFIDEAHTLIGAGNQAGGLDVSNLLKPAL
ARGELRTIAATTWSEYKKYVEKDAALSRRFQLVKVGEPNVEQATVILRGLRSIYEQSHGVLIDEEALQAAANLSARYISG
RQLPDKAIDVLDTACARVAINLTTPPRAVSQLQTRLHQQALEIAQLERQGRIGLGDTEERLVTLREARETDTATLAQLEA
DWQHQKTLVQQIVALRTALLNDAPPEDFDAAAAAAELADNERALAELQQPSVLVSPHVDKTQIASVIAEWTGVPLNRISQ
GELDVVTRLPDYLGDSIKGQQLAIAQLHKHLLTARADLRRPGRPLGAFLLVGPSGVGKTETVVQIADLMFGGRHYLTTIN
MSEYQEKHTVSRLIGSPPGYVGFGEGGVLTEAIRQKPYSVVLLDEVEKAHPDVLNLFYQAFDKGELADGEGRLIDCRNVV
FFLTSNLGFQTIVNFADRQSELLDALYPELAAFFKPALLARMEVIPYLPLDHDTLVEIVQGKLSRLVTLLQQRFGAEVVI
DDAVPEEILRLANRSENGARMLESVIDGALLPPVSLQLLQRLSAGQPVSRIHFRVEDGQFRSEVEG*

  Nucleotide sequence: 2601 bp    

>T6CP013450 NZ_CP006929:1396109-1398709 [Dickeya zeae EC1] [TssH]
GTGATTCGAATCGAACTGCCGATCCTGGTTGAGCGACTCAACCCGCTGTGCCGCCACATGATGGAAGAAGCGGCCGCGCT
GTGTATTCAGCATCAGGGCGCGGAGATCCGCATTGAGCACCTGTTGCTGAAAATGCTGGAAACACCGTTGTGCGATGTAC
GCCAGATCCTCAAACGCGCTGGGGTAGAGGCCGACGAACTGGCGGCATTGCTGCAACCCAATGCGGCGGATAAAGGCTTT
GAGTCAGGCTACCCGTCGTTTTCACCGCTGCTGGTGGAGTGGTTACAAGACAGCTGGTTGCTGGCTTCGGCCGAGCTTCA
ACACGCCCGCCTGCGCAGTGGCGTACTGCTGCTGGTGCTGCTGATGACGCCGACGCGTTATCTGTCCGCTGCGGTAACCC
GCCAGCTAGCGCAAATCAACCGTGAACTGCTGCGCCAGCAGTTTGACGAGTGGGTGAAAGACTCGGCGGAAACCGAGGTG
GTGACCGCCACGGGCATCGCACCGGAGCAGGCCGCCGCCGCGACCACCCAGCTTTCCCGTTATACCCAGAATGTCACCGA
ATCGGCCCGTCAGGGCAAGCTGGACCCGGTATTGTGCCGTGATCACGAAATCGACCTGATGATCGATATCCTCTCGCGCC
GTCGTAAAAATAACCCGATCGTGGTCGGTGAGGCCGGGGTAGGGAAAAGCGCACTGATTGAAGGGCTGGCACTGCGTATC
GTCGCGGGTCTGGTGCCGGAACGGCTGCGGGATGTGGAATTGCTGACGCTGGATTTGGGTGCCATGCAGGCCGGTGCGTC
GGTGAAAGGCGAGTTCGAGAAGCGCTTTAAAGGGGTGATGCAGGAAGTCAAAGAGGCACCAAAGCCGATTGTCCTGTTTA
TTGACGAGGCGCACACACTGATTGGTGCCGGTAATCAGGCCGGGGGGCTGGATGTGTCCAACCTGCTGAAACCGGCGCTG
GCTCGGGGGGAGTTGCGTACCATCGCGGCGACCACCTGGAGCGAGTACAAGAAATACGTGGAAAAAGACGCCGCGCTGTC
ACGCCGCTTCCAACTGGTGAAGGTGGGGGAGCCGAACGTCGAACAAGCCACGGTGATCCTGCGTGGGCTACGCAGCATTT
ACGAACAGTCACACGGCGTGTTGATTGACGAAGAAGCTTTGCAGGCGGCGGCCAATTTGTCTGCGCGCTATATCTCCGGG
CGTCAGTTGCCGGATAAAGCTATCGACGTGCTGGACACCGCCTGTGCGCGTGTCGCCATCAATCTGACCACACCACCGCG
CGCGGTCAGCCAGTTGCAGACCCGCCTGCACCAACAGGCGCTGGAAATCGCCCAGTTGGAACGTCAGGGCCGCATTGGCC
TGGGGGATACAGAGGAGCGGCTGGTCACGCTGCGTGAGGCCCGTGAAACCGACACCGCGACACTGGCGCAACTGGAAGCC
GACTGGCAACACCAAAAAACGCTGGTGCAGCAGATTGTCGCCCTGCGTACCGCGCTGCTCAATGATGCGCCGCCGGAGGA
TTTTGATGCCGCTGCCGCGGCGGCGGAGCTGGCTGATAACGAGCGGGCGCTGGCTGAACTGCAACAGCCGTCAGTGCTGG
TGTCACCGCATGTGGATAAAACCCAGATTGCCTCGGTGATCGCCGAGTGGACCGGTGTGCCGCTAAACCGCATTTCTCAG
GGCGAGCTGGACGTGGTCACCCGCCTGCCGGATTACCTTGGCGACAGCATCAAAGGGCAGCAACTGGCTATCGCCCAGTT
GCACAAGCACCTGCTGACCGCCCGTGCCGACCTGCGCCGTCCCGGCCGACCGCTGGGCGCGTTTTTGCTGGTGGGGCCGA
GCGGGGTCGGTAAAACCGAAACCGTGGTGCAGATTGCCGATCTGATGTTCGGTGGTCGTCATTACCTCACCACCATCAAC
ATGTCCGAATACCAGGAGAAGCACACGGTTTCTCGCCTGATCGGCTCGCCGCCGGGGTATGTCGGCTTTGGCGAAGGCGG
GGTGCTGACCGAAGCGATTCGCCAGAAACCCTATTCGGTGGTGCTGCTGGATGAAGTGGAGAAAGCCCACCCGGATGTCC
TCAATCTGTTCTATCAGGCGTTTGATAAAGGCGAACTGGCCGATGGCGAAGGACGGCTGATCGACTGTCGCAATGTGGTG
TTCTTCCTGACCTCCAACCTCGGGTTCCAGACGATTGTTAATTTTGCAGATCGGCAAAGCGAACTGCTGGATGCGCTCTA
CCCGGAACTGGCGGCGTTCTTCAAACCAGCATTGCTGGCGCGCATGGAAGTGATCCCTTACCTGCCTCTGGACCACGACA
CGCTGGTTGAGATTGTACAGGGCAAGCTGTCCCGTCTGGTGACGTTGCTGCAACAGCGCTTTGGTGCCGAAGTAGTCATC
GACGACGCCGTGCCGGAAGAAATTCTGCGTCTGGCAAACCGCAGCGAGAACGGGGCGCGCATGCTGGAGTCGGTGATCGA
CGGTGCGCTGCTGCCGCCGGTGTCGTTGCAGTTGCTGCAACGTCTGTCAGCCGGTCAGCCGGTCAGCCGTATTCATTTCC
GGGTGGAAGACGGTCAGTTCCGGTCTGAGGTGGAGGGCTGA