Detailed information of component protein


Summary

Component ID T6CP013448
Component protein type TssK
T6SS ID (Type) T6SS01037 insolico (Type i1)
Strain Dickeya zeae EC1
Replicon chromosome
Sequence Protein sequence (446 a.a.); Nucleotide sequence (1338 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) W909_RS06390
Coordinate (Strand) 1393963..1395300 (+)
NCBI ID WP_012884013.1
RefSeq NZ_CP006929
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 5.5e-156 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 446 a.a.    

>T6CP013448 NZ_CP006929:1393963-1395300 [Dickeya zeae EC1] [TssK]
MSSRNRIIWREGLFIKPQHFQQQQRHTDYALHARLSALSDYFYGLQSLAINEEYLNFGRIALVNATGVMPDGTVFNIPGD
DALPQPLEITDVALANQKVYLALPLAVNGVSEVGQAGAGIATRLQSHRHDVRDLHSEGGDVVSVEVGKVSLRLMLERDDR
SAYASLAIANILDKRPDGGLVLDPNFMPCSISVTAIPSLKRFLGESAGLVAERARSLAQRIAAPGQQGVADVAEFMMLQL
LNRAQPQLSHLARLGTLHPERLHEALVQLCGELMTFTDESRLPPEFPAYRHEHQQSSFEPLMMALRQALSTVLSPRAVSI
QMKAQPYGVRVALVGDAELMASAEFVLAVRARMPQEHLRKQLLQQTKIASSDKIRELISLQLPGVPLLPLPVAPRQLPYH
AGYSYFQLDRQSPAWKSLVTSNTLAFHIAGEFPELDMQLWAIRGQ*

  Nucleotide sequence: 1338 bp    

>T6CP013448 NZ_CP006929:1393963-1395300 [Dickeya zeae EC1] [TssK]
ATGTCGAGCCGAAATCGGATTATTTGGCGGGAAGGGCTGTTCATCAAGCCGCAGCATTTCCAGCAACAGCAACGACACAC
CGACTACGCACTGCACGCTCGTCTTAGCGCGCTCAGTGATTATTTCTACGGCCTGCAATCGCTGGCTATTAACGAAGAGT
ACCTTAACTTCGGGCGTATCGCGCTGGTGAACGCCACCGGCGTGATGCCGGATGGCACGGTCTTCAATATCCCAGGGGAT
GATGCGTTGCCGCAACCGCTGGAGATTACCGATGTGGCGCTGGCGAACCAGAAGGTCTATCTGGCGCTGCCGCTGGCGGT
GAACGGTGTGAGCGAAGTCGGGCAGGCCGGAGCCGGTATTGCCACCCGTCTGCAATCCCACCGGCATGATGTGCGTGACT
TGCACAGCGAAGGCGGTGACGTGGTGTCGGTGGAAGTGGGCAAGGTCAGCCTGCGGCTGATGCTGGAGCGTGATGACCGC
AGTGCCTACGCGTCGCTGGCGATCGCCAACATCCTCGACAAACGGCCAGACGGTGGGCTGGTTCTTGACCCTAACTTTAT
GCCGTGCAGCATCAGCGTCACGGCGATTCCGAGCCTGAAACGCTTTCTGGGGGAATCGGCCGGTCTGGTGGCTGAACGCG
CCCGCAGCCTGGCCCAGCGTATCGCTGCGCCCGGTCAGCAAGGGGTGGCGGATGTGGCGGAATTCATGATGCTGCAACTG
CTTAACCGCGCCCAGCCGCAACTGTCGCATCTGGCGCGCCTCGGCACGTTACACCCGGAGCGGCTGCATGAAGCACTGGT
GCAACTGTGCGGCGAGCTGATGACCTTTACCGATGAATCGCGCCTGCCGCCGGAGTTTCCCGCTTATCGTCATGAGCATC
AGCAATCGAGCTTTGAGCCACTGATGATGGCGCTACGTCAGGCGTTGAGTACCGTGCTGTCGCCACGTGCGGTGTCGATT
CAGATGAAGGCGCAGCCTTACGGCGTCAGGGTGGCGCTGGTGGGCGACGCCGAACTGATGGCCAGTGCCGAATTTGTGCT
GGCGGTGCGCGCCCGTATGCCGCAAGAACATTTGCGCAAGCAACTGCTGCAACAAACCAAGATCGCCTCCAGCGACAAAA
TCCGCGAACTCATCAGTCTGCAACTGCCTGGCGTACCGTTGCTGCCACTGCCGGTGGCACCGCGTCAGTTGCCGTACCAC
GCCGGTTACAGCTACTTCCAGTTGGACAGGCAAAGCCCGGCCTGGAAATCGCTGGTCACCAGCAACACGCTGGCGTTCCA
CATCGCTGGCGAGTTCCCGGAACTGGATATGCAACTGTGGGCCATCCGCGGCCAGTAG