SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP013446
Component protein type	TssG
T6SS ID (Type)	T6SS01037 (Type i1)
Strain	Dickeya zeae EC1
Replicon	chromosome
Sequence	Protein sequence (338 a.a.); Nucleotide sequence (1014 bp)
Reference	[1] Lv M, Hu M, Li P, et al. A two-component regulatory system VfmIH modulates multiple virulence traits in Dickeya zeae. Mol Microbiol. 2019 Jun;111(6):1493-1509. doi: 10.1111/mmi.14233. Epub 2019 Mar 28. PMID: 30825339

Bioinformatics investigation has been performed on this T6SS

External database links

Locus tag (Gene)	W909_RS06375
Coordinate (Strand)	1391179..1392192 (+)
NCBI ID	WP_012884010.1
RefSeq	NZ_CP006929
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	1.7e-92	23..323

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
		-	-

Protein sequence: 338 a.a.

						>T6CP013446 NZ_CP006929:1391179-1392192 [Dickeya zeae EC1] [TssG]
MAGADRSALDDVTAGQAMFRQDARHFNFFQLVELLNQMEGVDLEQALDFRPELERIRFRSTASIGFHPSDVLRVGEDTDG
RQELEVAFLGLHGSQSPMPGYYLEELAWEYAQGEQKLGVFLDFFHHRLLTLLHRAWRKYRYHVRFQNDGEDGFSRLMFAL
VGLGNDAVRDSLPVNRAKMLSYAGLLASPSRSPEVVAGLVIHCFDLEDVEVIAWQHRKVPIFEDQQNRLGRANSLLGGDF
VIGDKVNDCAGKFLLKVDNLSFSRFLSFLPNGEHFQPLVRFVSFILRDQLAWDLRLGFAEGEARGLRLGDDQSSRLGWSS
FLGQPPADPYVTICVQE*					

Nucleotide sequence: 1014 bp

						>T6CP013446 NZ_CP006929:1391179-1392192 [Dickeya zeae EC1] [TssG]
ATGGCCGGTGCAGATAGGTCAGCACTCGATGATGTGACCGCAGGGCAGGCGATGTTTCGCCAGGATGCGCGCCACTTCAA
CTTTTTCCAACTGGTGGAGTTACTCAACCAGATGGAAGGCGTCGATCTGGAGCAGGCGCTCGACTTCCGCCCGGAACTGG
AGCGCATTCGCTTTCGCTCCACCGCCTCGATTGGCTTTCATCCCAGTGATGTGCTGCGGGTGGGGGAAGATACCGATGGC
AGGCAGGAGCTGGAAGTGGCGTTTCTCGGGCTGCATGGCAGCCAGTCGCCGATGCCGGGGTATTACCTTGAAGAACTGGC
GTGGGAATACGCCCAGGGCGAGCAGAAACTGGGGGTGTTCCTCGATTTCTTTCATCATCGATTGCTGACGTTATTGCACC
GTGCCTGGCGTAAGTACCGCTATCACGTGCGTTTCCAGAATGATGGCGAAGATGGCTTCTCCCGGCTGATGTTCGCGTTG
GTGGGGCTGGGTAACGACGCGGTGCGCGACAGTCTGCCGGTCAACCGTGCCAAGATGCTGTCTTACGCCGGTCTGTTGGC
CAGCCCCAGCCGTTCGCCGGAAGTGGTGGCTGGACTGGTGATTCACTGCTTTGACCTGGAAGACGTCGAAGTCATCGCCT
GGCAACACCGCAAAGTACCGATTTTTGAAGACCAGCAAAACCGCCTTGGGCGCGCGAATAGCCTGCTGGGTGGGGATTTT
GTCATCGGCGACAAAGTGAACGACTGCGCCGGTAAATTCCTGCTCAAGGTGGATAACCTCAGCTTCAGCCGTTTTCTCAG
TTTCCTGCCCAACGGCGAACATTTTCAACCGCTGGTGCGTTTTGTTTCCTTCATTTTGCGTGATCAACTGGCCTGGGACT
TACGCCTCGGTTTCGCCGAAGGGGAGGCCAGAGGGCTAAGACTGGGCGATGACCAGAGCAGCCGCCTGGGATGGAGCAGC
TTTCTCGGGCAGCCGCCCGCCGACCCGTATGTGACGATTTGTGTGCAGGAGTAA					