Detailed information of component protein


Summary

Component ID T6CP013445
Component protein type TssF
T6SS ID (Type) T6SS01037 insolico (Type i1)
Strain Dickeya zeae EC1
Replicon chromosome
Sequence Protein sequence (589 a.a.); Nucleotide sequence (1767 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) W909_RS06370
Coordinate (Strand) 1389449..1391215 (+)
NCBI ID WP_016943509.1
RefSeq NZ_CP006929
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 2.1e-151 3..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 589 a.a.    

>T6CP013445 NZ_CP006929:1389449-1391215 [Dickeya zeae EC1] [TssF]
MSLEHFFRDELAYLRLQGREFANAHPELTRFLSEQTTDPDVERLLEGFAFLTGSLRAKIEDEFPELTHGLLGMLWPNYLR
PVPSMTIMQFSVLPGAIAQPAFVARGCELDSLPIDDVVCHFQTSHDAWIYPADIRQINAQSGNDMSAITLDIGLHGPVAL
GDLQLDKLRFFLGGDRYTAYELYFWIASQLSHIELEVDGKRFRQEANVLKTVGFEREDAMLPYPGNVYSGYRILQEYFCF
PESFLFFQLSGASWPDQPLIVTDFKLHFCFDRPLPAELKIRPDSFMLNCVPAINLFRHDSEPINLDGRQTDYPLKASYRH
ADSFEIFSIDKVEGWVEGNSGRARGIPRLYQPFESFQHQIERAKGRLALYYRIRVREAVNGDGFDHLLSFVRGDEKEVID
LDESISVSLTCTNRSRAAQLPVGAICVPTGSSPSFATFRNLIRPTRPLRPALDGSLHWTLISNLSLNYVSLLRRDALVQI
LRTYDFPALHDKQAEQASRKRLAGIETIETTPVDRLVQGMPVRGLKSVLSVRQSAFASEGELYLFSTVLAHFFSLYASVN
AFHLLEVVNIDNKERYRWPVQIGQHSMM*

  Nucleotide sequence: 1767 bp    

>T6CP013445 NZ_CP006929:1389449-1391215 [Dickeya zeae EC1] [TssF]
ATGTCGCTGGAACATTTCTTCAGGGATGAACTCGCTTATTTGCGTCTGCAAGGACGTGAATTTGCCAATGCACACCCTGA
ACTTACCCGATTTTTGTCAGAACAGACCACGGATCCGGATGTCGAGCGATTGCTGGAAGGGTTCGCCTTTCTGACCGGCA
GTCTGCGGGCGAAGATCGAGGATGAATTTCCTGAGCTGACTCACGGCCTGCTGGGCATGCTGTGGCCGAACTATTTGCGC
CCGGTACCCAGCATGACCATCATGCAATTTTCGGTGCTGCCCGGTGCTATCGCGCAACCGGCGTTTGTAGCGCGTGGCTG
CGAGCTGGACAGCCTGCCAATAGACGATGTGGTCTGCCATTTCCAAACCAGCCACGATGCCTGGATCTACCCGGCGGATA
TCCGCCAGATCAACGCGCAAAGCGGCAACGACATGTCCGCCATCACGCTGGATATTGGTCTGCACGGGCCGGTGGCGCTG
GGGGATTTGCAGCTGGATAAACTGCGCTTCTTCCTGGGGGGCGACCGTTATACCGCTTACGAACTCTATTTCTGGATAGC
CAGCCAGCTGTCACACATTGAGCTGGAAGTGGACGGAAAACGCTTTCGTCAGGAAGCGAATGTACTCAAAACCGTCGGCT
TTGAGCGTGAAGACGCGATGCTGCCGTATCCCGGTAATGTGTACTCCGGCTACCGTATCTTGCAGGAGTATTTCTGTTTT
CCGGAAAGTTTCCTGTTCTTTCAGTTGTCTGGTGCCAGTTGGCCTGACCAGCCGCTGATCGTGACGGATTTCAAACTGCA
TTTCTGCTTTGACCGGCCGCTGCCGGCGGAACTGAAAATCCGCCCGGATTCGTTCATGCTCAACTGCGTACCGGCTATCA
ACCTGTTCCGTCATGACAGCGAACCGATCAACCTGGATGGTCGCCAGACGGACTACCCGCTGAAAGCCAGTTACCGCCAC
GCCGACAGTTTCGAGATTTTCTCCATCGATAAAGTGGAGGGGTGGGTGGAAGGTAACAGTGGGCGCGCGCGAGGTATCCC
ACGGCTTTACCAACCTTTCGAGAGTTTTCAGCACCAAATCGAGCGGGCCAAAGGTCGACTGGCGCTGTATTACCGCATTC
GGGTGCGCGAAGCCGTCAACGGTGATGGTTTCGATCACTTATTGTCGTTCGTGCGGGGCGACGAAAAAGAAGTCATCGAC
CTGGACGAGTCCATTTCGGTGAGCCTGACTTGCACCAACCGTTCGCGGGCGGCGCAGTTGCCCGTGGGCGCGATTTGTGT
GCCGACCGGCAGCTCACCGTCTTTTGCCACCTTCCGTAACCTGATTCGGCCGACCCGTCCATTGCGTCCGGCACTCGATG
GCAGCCTGCACTGGACACTTATCTCCAACCTGTCGTTGAACTATGTGTCGCTGCTGCGACGCGATGCGCTGGTGCAGATC
CTGCGTACCTACGACTTCCCGGCACTGCATGACAAACAGGCCGAGCAGGCATCGCGCAAACGGCTGGCAGGGATTGAAAC
GATTGAGACCACACCGGTCGACCGGCTGGTACAGGGGATGCCGGTACGCGGACTCAAATCCGTTCTCTCCGTGCGGCAGT
CGGCGTTCGCCAGTGAAGGCGAACTCTATCTGTTTAGCACCGTGCTGGCGCATTTCTTCTCGTTGTACGCCAGCGTTAAC
GCCTTCCACCTGCTGGAAGTGGTCAACATCGATAACAAGGAGCGCTACCGATGGCCGGTGCAGATAGGTCAGCACTCGAT
GATGTGA