Detailed information of component protein


Summary

Component ID T6CP013444
Component protein type TssE
T6SS ID (Type) T6SS01037 insolico (Type i1)
Strain Dickeya zeae EC1
Replicon chromosome
Sequence Protein sequence (144 a.a.); Nucleotide sequence (432 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) W909_RS06365
Coordinate (Strand) 1389015..1389446 (+)
NCBI ID WP_012770484.1
RefSeq NZ_CP006929
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 3.9e-17 34..122
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 144 a.a.    

>T6CP013444 NZ_CP006929:1389015-1389446 [Dickeya zeae EC1] [TssE]
MPSLSAWERGSAASLFDRIRGEERRSSPETELEDLIASVKRQLDQVLNTRPGSCRSAPELGVIDFNDATQGGADIRGKIR
EAIRQCICRFEPRIVHVDVSASDYLSNPLEMSFQVTAHVRLEELEQVTSFNIHMDSHRHYRMM*

  Nucleotide sequence: 432 bp    

>T6CP013444 NZ_CP006929:1389015-1389446 [Dickeya zeae EC1] [TssE]
ATGCCGTCGCTCTCTGCCTGGGAGCGGGGATCTGCGGCCAGCCTGTTTGATCGCATCCGGGGAGAGGAGCGTCGCTCCTC
CCCCGAAACGGAATTAGAAGACTTGATCGCGTCGGTGAAACGCCAGCTTGATCAAGTGCTGAATACGCGTCCCGGCAGTT
GTCGCAGCGCACCTGAGCTTGGCGTGATTGATTTTAATGACGCTACGCAGGGCGGCGCGGATATTCGGGGCAAAATCCGT
GAGGCGATCCGGCAGTGTATCTGTCGCTTTGAACCGCGCATTGTCCATGTGGACGTCAGTGCATCGGACTATCTGTCCAA
TCCGCTGGAGATGTCGTTTCAGGTCACCGCCCATGTGCGGCTGGAAGAACTGGAACAGGTCACCTCCTTCAATATTCATA
TGGACAGCCACCGCCATTACAGAATGATGTGA