Detailed information of component protein


Summary

Component ID T6CP013443
Component protein type TssC
T6SS ID (Type) T6SS01037 insolico (Type i1)
Strain Dickeya zeae EC1
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
insolico Bioinformatics investigation has been performed on this T6SS
External database links

Locus tag (Gene) W909_RS06360
Coordinate (Strand) 1387530..1389008 (+)
NCBI ID WP_012884008.1
RefSeq NZ_CP006929
Uniprot ID -
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 9.2e-124 66..365
VipB_2 PF18945.2 7.6e-46 378..489
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
- -


  Protein sequence: 493 a.a.    

>T6CP013443 NZ_CP006929:1387530-1389008 [Dickeya zeae EC1] [TssC]
MSMVEEQAQTSAAGGSSSLLEEIMAQARITPVDEGYNVAKQGIAALVANILDSGNAAEPVNKALVDSMIVELDKKLSKQI
DVILHAQELQELESSWRSLKLLIDRTDFRENIKILLLHATKDELLEDFEFAPEITQSGFYKHVYSSGYGQFGGQPIGGVI
GDYALTQSSPDIKLMQYVSAVGAMAHAPFISSVAPTFFGVDSFTDLPSIKDLKSVFEGPTYTKWRSMRESEDARYLGLTA
PRFLARLPYDPVENPIKGFNYKEDISASHENYLWGNTAYLMGTAITDSFAKYRWCPNIIGPQSGGAITDLPVHVYEAMGQ
LQAKIPTEVLITDRREYEMAEEGFITLTMRKDSDNAAFFSANSVQKPKVFANTKEGKEAETNYKLGTQLPYMFIINRLAH
YIKVLQREQIGSWKERQDLERELNNWIKQYVADQENPPADVRSRRPLRAAQIKVLDVEGEPGWYQVTMAVRPHFKYMGAN
FELSLVGRLDKE*

  Nucleotide sequence: 1479 bp    

>T6CP013443 NZ_CP006929:1387530-1389008 [Dickeya zeae EC1] [TssC]
ATGTCAATGGTTGAAGAACAGGCCCAGACAAGCGCGGCCGGTGGTTCATCATCGCTGCTTGAAGAGATCATGGCGCAGGC
GCGCATTACCCCGGTGGATGAAGGTTATAACGTCGCCAAACAGGGTATTGCCGCACTGGTAGCAAACATTCTGGATAGCG
GCAACGCAGCCGAGCCGGTGAACAAAGCGCTGGTCGACAGCATGATCGTTGAGCTGGACAAAAAACTCAGCAAACAAATC
GACGTGATTCTGCATGCTCAGGAGCTACAGGAACTGGAATCCTCCTGGCGTTCACTGAAGCTGCTGATTGATCGCACCGA
TTTCCGTGAAAACATCAAAATCCTGCTGCTGCACGCGACCAAAGACGAGCTGCTGGAAGACTTTGAGTTTGCACCGGAAA
TTACCCAATCCGGTTTCTATAAACACGTGTATTCCAGCGGCTACGGCCAGTTCGGCGGCCAGCCGATCGGCGGGGTGATT
GGCGATTATGCGCTGACCCAAAGCTCGCCGGACATCAAGCTGATGCAGTATGTCAGCGCGGTAGGCGCGATGGCGCATGC
CCCGTTTATCTCCTCCGTTGCACCGACTTTCTTCGGTGTAGACAGCTTTACCGACCTGCCATCGATCAAAGACCTGAAGT
CGGTGTTTGAAGGCCCGACCTATACCAAATGGCGCTCAATGCGTGAGTCGGAAGATGCCCGTTATCTGGGGCTGACAGCA
CCGCGTTTCCTGGCCCGTTTGCCGTATGACCCGGTAGAAAACCCCATCAAAGGGTTTAACTACAAGGAAGACATCAGCGC
CAGTCACGAAAACTATTTGTGGGGCAACACCGCGTACCTGATGGGTACCGCCATCACCGACAGCTTCGCCAAGTACCGCT
GGTGTCCGAACATCATCGGCCCACAGAGCGGTGGTGCTATCACCGACTTGCCGGTGCATGTGTATGAAGCGATGGGCCAG
TTGCAGGCCAAGATCCCGACCGAAGTGTTGATCACCGACCGTCGTGAATACGAAATGGCCGAAGAAGGTTTCATCACGCT
GACCATGCGCAAAGACAGCGATAACGCCGCGTTTTTCTCTGCCAACTCGGTGCAGAAACCCAAGGTGTTCGCCAATACCA
AAGAAGGTAAAGAGGCGGAAACCAACTACAAACTGGGTACGCAGCTGCCGTACATGTTCATCATCAACCGTCTGGCGCAC
TACATCAAAGTGTTGCAGCGCGAGCAGATCGGTTCCTGGAAAGAGCGTCAGGATCTGGAGCGCGAGCTGAATAACTGGAT
CAAGCAGTACGTCGCTGATCAGGAAAACCCGCCTGCTGATGTCCGCAGCCGTCGTCCGCTGCGTGCGGCACAAATCAAAG
TGCTGGACGTAGAAGGCGAACCGGGCTGGTACCAGGTGACCATGGCCGTGCGTCCACACTTCAAGTACATGGGGGCGAAC
TTTGAACTGTCCCTGGTTGGTCGTCTGGATAAGGAATAA