Detailed information of component protein
Summary
| Component ID | T6CP013442 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01037  (Type i1) |
| Strain | Dickeya zeae EC1 |
| Replicon | chromosome |
| Sequence | Protein sequence (168 a.a.); Nucleotide sequence (504 bp) |
| Reference |
Bioinformatics investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | W909_RS06355 |
| Coordinate (Strand) | 1386995..1387498 (+) |
| NCBI ID | WP_012770486.1 |
| RefSeq | NZ_CP006929 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 3.6e-56 | 9..160 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| - | - |
Protein sequence: 168 a.a.
>T6CP013442 NZ_CP006929:1386995-1387498 [Dickeya zeae EC1] [TssB]
MAKGTDGASVAPKERINIKYVPATGGQQAEIELPLTLMVVGNMKGRTEETPIEERQTVSIDKNNFTSVMKEANLELNFSV
PNRLEEDSQDDLPVKLSIASLNDFSPDRIAQQVPELRKLLELREALVALKGPLGNIPAFRNRLQDLLSSEEAREQLLKEL
DLVKPAE*
MAKGTDGASVAPKERINIKYVPATGGQQAEIELPLTLMVVGNMKGRTEETPIEERQTVSIDKNNFTSVMKEANLELNFSV
PNRLEEDSQDDLPVKLSIASLNDFSPDRIAQQVPELRKLLELREALVALKGPLGNIPAFRNRLQDLLSSEEAREQLLKEL
DLVKPAE*
Nucleotide sequence: 504 bp
>T6CP013442 NZ_CP006929:1386995-1387498 [Dickeya zeae EC1] [TssB]
ATGGCAAAAGGAACTGACGGTGCATCTGTCGCACCAAAGGAACGTATTAATATCAAATATGTCCCGGCCACTGGTGGTCA
GCAGGCGGAAATTGAACTCCCGCTTACGCTGATGGTGGTGGGAAATATGAAAGGACGCACAGAAGAGACGCCGATTGAAG
AACGTCAGACGGTGTCTATCGATAAGAATAATTTCACTTCGGTCATGAAAGAGGCCAACCTGGAGTTGAATTTCAGCGTA
CCTAACCGTCTGGAAGAAGACAGCCAGGATGACCTTCCCGTCAAACTCAGCATTGCTTCGCTAAATGATTTCTCTCCCGA
TCGTATCGCACAGCAAGTGCCGGAACTGCGCAAATTGCTGGAATTGCGAGAAGCACTGGTCGCCTTGAAAGGGCCGCTGG
GTAATATTCCCGCTTTCCGTAATCGCCTGCAGGACCTGTTGTCCAGCGAAGAAGCCAGAGAGCAGCTGCTCAAAGAGCTG
GATCTGGTGAAACCCGCCGAATAA
ATGGCAAAAGGAACTGACGGTGCATCTGTCGCACCAAAGGAACGTATTAATATCAAATATGTCCCGGCCACTGGTGGTCA
GCAGGCGGAAATTGAACTCCCGCTTACGCTGATGGTGGTGGGAAATATGAAAGGACGCACAGAAGAGACGCCGATTGAAG
AACGTCAGACGGTGTCTATCGATAAGAATAATTTCACTTCGGTCATGAAAGAGGCCAACCTGGAGTTGAATTTCAGCGTA
CCTAACCGTCTGGAAGAAGACAGCCAGGATGACCTTCCCGTCAAACTCAGCATTGCTTCGCTAAATGATTTCTCTCCCGA
TCGTATCGCACAGCAAGTGCCGGAACTGCGCAAATTGCTGGAATTGCGAGAAGCACTGGTCGCCTTGAAAGGGCCGCTGG
GTAATATTCCCGCTTTCCGTAATCGCCTGCAGGACCTGTTGTCCAGCGAAGAAGCCAGAGAGCAGCTGCTCAAAGAGCTG
GATCTGGTGAAACCCGCCGAATAA