Detailed information of component protein


Summary

Component ID T6CP013404
Component protein type TssA
T6SS ID (Type) T6SS01034 experimental (Type i1)
Strain Escherichia coli PCN033
Replicon chromosome
Sequence Protein sequence (472 a.a.); Nucleotide sequence (1416 bp)
Reference
[1] Peng Y, Wang X, Shou J, et al. Roles of Hcp family proteins in the pathogenesis of the porcine extraintestinal pathogenic Escherichia coli type VI secretion system. Sci Rep. 2016 May 27;6:26816. doi: 10.1038/srep26816. PMID: 27229766
[2] Zong B, Zhang Y, Wang X, et al. Characterization of multiple type-VI secretion system (T6SS) VgrG proteins in the pathogenicity and antibacterial activity of porcine extra-intestinal pathogenic Escherichia coli. Virulence. 2019 Dec;10(1):118-132. doi: 10.1080/21505594.2019.1573491. PMID: 30676217
[3] Hu L, Wang C, Lu W, et al. BaeSR activates type VI secretion system expression in porcine extra-intestinal pathogenic Escherichia coli to enhance bacterial resistance to zinc stress. Microb Pathog. 2020 Oct;147:104357. doi: 10.1016/j.micpath.2020.104357. Epub 2020 Jun 27. PMID: 32603765
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) PPECC33_RS01160
Coordinate (Strand) 251512..252927 (-)
NCBI ID WP_001240540.1
RefSeq NZ_CP006632
Uniprot ID A0A792T5C9_ECOLX
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 4.9e-69 223..466
ImpA_N PF06812.14 3.2e-06 27..112
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-471 MAMDLRDPNVWMSHLMENLQEEKLASALKDDTPDWEYIDGEIVKLGSLAHSQLDIPELQRRGLVLLASESKDFRLLAHLLRTLQHAGDPHLALRLLALYVEHYWVVAAPQNMAHKKRFASQVIKRFATGIEGFSQNAATAQRDALLGELAKLAQCWQSHNAPELAQATDDLFALYQRAFNRAVPAPVPTLAASGSSPQTTTTSESGVTQTSTPAPQIAIDSHDDKAWRDTLLKVAAILCERQPDSPQGYRLRRYALWQSITSTPQAESDGRTPLAAVSADMVADYHAQLGSADMALWQQVEKSVLLAPYWLDGHCISAQTAHRLGYTAAADAIRDEVVSFLGRLPALADLLFNDRTPFVSEKTKQWLASQAGNPAAPVIQASNEDIQAARACFDEHGLEAALRYLNTLPDGDPRNQFHRQYFSAQLMEEAGLIQLAQQQYRMLFRLAGEMMVIDWEPSLLTQLEQKFTAEY


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9970 - -


  Protein sequence: 472 a.a.    

>T6CP013404 NZ_CP006632:c252927-251512 [Escherichia coli PCN033] [TssA]
MAMDLRDPNVWMSHLMENLQEEKLASALKDDTPDWEYIDGEIVKLGSLAHSQLDIPELQRRGLVLLASESKDFRLLAHLL
RTLQHAGDPHLALRLLALYVEHYWVVAAPQNMAHKKRFASQVIKRFATGIEGFSQNAATAQRDALLGELAKLAQCWQSHN
APELAQATDDLFALYQRAFNRAVPAPVPTLAASGSSPQTTTTSESGVTQTSTPAPQIAIDSHDDKAWRDTLLKVAAILCE
RQPDSPQGYRLRRYALWQSITSTPQAESDGRTPLAAVSADMVADYHAQLGSADMALWQQVEKSVLLAPYWLDGHCISAQT
AHRLGYTAAADAIRDEVVSFLGRLPALADLLFNDRTPFVSEKTKQWLASQAGNPAAPVIQASNEDIQAARACFDEHGLEA
ALRYLNTLPDGDPRNQFHRQYFSAQLMEEAGLIQLAQQQYRMLFRLAGEMMVIDWEPSLLTQLEQKFTAEY*

  Nucleotide sequence: 1416 bp    

>T6CP013404 NZ_CP006632:c252927-251512 [Escherichia coli PCN033] [TssA]
ATGGCAATGGACTTACGCGATCCGAATGTCTGGATGTCGCACCTGATGGAAAATCTGCAGGAAGAGAAACTGGCATCGGC
GCTGAAAGATGACACCCCGGACTGGGAATATATCGACGGCGAAATCGTCAAGCTGGGGTCACTGGCCCACAGCCAACTGG
ATATCCCGGAACTCCAGCGCCGGGGGCTGGTCCTTCTGGCTTCGGAGAGTAAGGATTTTCGTCTGCTGGCGCATCTGCTG
AGAACCCTGCAACACGCCGGTGATCCTCATCTCGCATTGCGCCTGCTGGCGCTGTATGTGGAGCATTACTGGGTGGTGGC
CGCGCCGCAGAATATGGCGCATAAAAAACGCTTTGCCAGCCAGGTCATTAAACGCTTTGCAACAGGTATTGAAGGCTTTT
CACAGAACGCAGCCACAGCGCAGCGCGATGCGCTATTAGGTGAACTGGCGAAACTGGCGCAGTGCTGGCAGTCACATAAC
GCCCCGGAACTGGCACAGGCTACTGATGATCTTTTTGCCCTGTACCAGCGTGCGTTTAACCGTGCGGTACCGGCTCCTGT
CCCCACTCTGGCGGCCTCCGGTAGTTCACCACAGACCACCACCACGTCTGAAAGCGGCGTGACGCAAACCAGTACTCCGG
CTCCACAGATCGCCATCGACAGTCACGACGACAAAGCCTGGCGCGACACGCTGTTAAAAGTGGCGGCCATTTTATGTGAA
CGCCAACCGGACTCGCCGCAGGGCTATCGCCTGCGCCGCTATGCCCTGTGGCAATCCATCACCAGTACGCCCCAGGCAGA
AAGCGATGGACGAACCCCACTGGCCGCGGTCTCCGCCGATATGGTTGCAGATTACCATGCTCAGCTCGGTAGTGCCGATA
TGGCGCTGTGGCAGCAGGTGGAAAAAAGCGTATTGCTGGCACCCTACTGGCTGGACGGTCACTGCATTTCTGCACAGACG
GCGCACCGTCTTGGCTATACCGCCGCGGCCGATGCCATCCGCGATGAAGTCGTTTCCTTTCTTGGCCGTCTGCCCGCTCT
TGCCGATCTTCTCTTTAACGACCGCACACCGTTTGTTTCAGAAAAAACTAAGCAGTGGCTTGCGTCTCAGGCTGGCAACC
CGGCAGCTCCGGTCATACAGGCGAGTAATGAAGATATTCAAGCTGCGCGAGCGTGTTTTGATGAACATGGGCTGGAGGCC
GCCTTACGGTATCTAAACACTTTGCCCGATGGTGACCCTCGCAACCAGTTTCATCGCCAGTATTTTAGTGCGCAGCTTAT
GGAAGAGGCGGGACTGATACAGCTTGCACAGCAGCAGTACCGAATGCTGTTCAGGTTGGCTGGAGAAATGATGGTTATTG
ACTGGGAGCCGTCTTTACTTACGCAGCTCGAACAAAAATTCACGGCAGAATACTAA