Detailed information of component protein


Summary

Component ID T6CP013400
Component protein type TssM
T6SS ID (Type) T6SS01033 experimental (Type i3)
Strain Serratia sp. FS14
Replicon chromosome
Sequence Protein sequence (1160 a.a.); Nucleotide sequence (3480 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene)
Coordinate (Strand) 2850755..2854234 (+)
NCBI ID WP_044030913.1
RefSeq NZ_CP005927
Uniprot ID UPI0004994631
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-4 MIRR
Transmembrane helix 5-27 SFILVIALLLCAVVWWIGPLIAI
Outside 28-41 GTYRPLLSVWVRGI
Transmembrane helix 42-64 IIALILCWALWPFVATFLSWVFR
Inside 65-430 HARAPAPAKRKTAQRDRVTSRFYDALRTLQYVGTAKQRTPWQRFKYRLARRYVSEKPWFLVIGPPGSGKTSLIGESGERFLLAEHYGLQQTVDVGPTQDCNWWLAENSVYVDTSGEWLQLNGLGEEGARARDTLFKLIRRHRRHPGIDGIMLCLDARWLLHASLTERKSVADALRVRLLEMASWFRSELPVYLTISHLDQLVGGETFLSMLGDDLLQKGMGFSLNRAEQGETPFEQYETLYREMVARVSHHVLELLHDAPDGQNRQQLLFFTESLGSLGNPLYSLLEQIFPQTPVGYACHLQQVWLGSTIALPPQGAIYNAEAADIYEARPTGRIYHPELDYARQERGVMQQSSHARPLGSRMSSL
Transmembrane helix 431-453 GRYVLVLILLAVSFNLLAMRYLW
Outside 454-1159 ESDYISYIAARFDETKRIVREIPVTNRVSDDVISAYEQLGYMNAQLGGEVSPVPNPYFEHKLINSAAQKTYQRHLLQIFWPAVENYIADELKNDVSASNKDVYGTLKVYLMMGEPSHRSAEALVDWFMARWETFMPQGYTDMNKGIFAYHLREMFSLPDAPVMKMNGDLLRLARVKAMNIPMQVRVVRRIEEKPLPAAINDISLADAAGPNVSLMLRRKSQATVTDTAVPGFYTRASYRDVFLAQLDDAAKDMIEEESWVLRDSGEGKNAVNSLASAQKLADEARKLYLIEYADKWDAFMRDVRARPVNGLEDAAILARQLSDPSFPLANLVRFAARETSMTGTNQGDAASWFDRQRNRIEQQRRDILGEISGERARFRLTPERAVEDRFELLRRLGYQLLQTTNASNDPLSRSFEALYSQLTTLSTSLRGGQVVPAGGTLKRLQLDAARQPEPVRSVMMDLLQVGDSQTIQQSQKNLSKGASSLASGLCKSSISGRYPFSRNARAEVGIEDFSRMFGQSGAMQQFFDENLAPYVDVNAQKWNAKPGSEGIVNASTLGAFENARLIRDTFFTAGDKLSFSMFIRPLSLTPTITEATLDIDGQVINYSHGFSQPTRIDWPGPKGGSYVRLTFRTGTGQIQVASFDGPWALFRMFDASNPVPLASDRRELTMSMSSVVGVLKLELRSTMKDFPLWSRALRGFSCPKAM


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9598 - -


  Protein sequence: 1160 a.a.    


  Nucleotide sequence: 3480 bp