Detailed information of component protein
Summary
| Component ID | T6CP013399 |
| Component protein type | TssL |
| T6SS ID (Type) | T6SS01033  (Type i3) |
| Strain | Serratia sp. FS14 |
| Replicon | chromosome |
| Sequence | Protein sequence (504 a.a.); Nucleotide sequence (1512 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | |
| Coordinate (Strand) | 2849208..2850719 (+) |
| NCBI ID | WP_044030912.1 |
| RefSeq | NZ_CP005927 |
| Uniprot ID | UPI000499431E |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Inside | 1-288 | MNEFERKIREAMAVTRNNATPRLPASGSVGKTTAEIAALSFGARALAAKLRPGSAGLATPPEPKPYEAESVAPESSEPAPGERPAEAAPTSSGLFGRAALSKPGVMMGHWDNPLIAAAIPVLLQVERVRDQKQLNPGAVRAQIVREIQQFQQTLLADHIAPSDVDKLAYLLCSYVDECCMSTLESGELNLSLLVEFYRDAWGGEKCFEHLQAYLAASPRNKEILAFYDLILSLGFEGQYHVMERGAVLLADVRNRLDGYLYSQNPTQTLADAEPSKVVRKATRITPLK |
| Transmembrane helix | 289-308 | LLCYGLAIALLAYASAAWYL |
| Outside | 309-503 | HDQSRALRNAILAWTPPQPRKINIMETLPQPLPQILSEGWLEVRADPRGWLLIFTSDGAFATGQSKLSEEFKKKRNIERLGEALAPWPGDLEVIGHTDNKPYRNTSNNSNLKLSEARAQTVADKLRESLANSKYNRTVTSVGKGDQEPLDDNATEEGRRRNRRVDILWKIGEREMASPSATLNQAGVAAEVPEDN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.6040 | - | - |
Protein sequence: 504 a.a.
Nucleotide sequence: 1512 bp