Detailed information of component protein


Summary

Component ID T6CP013398
Component protein type TssK
T6SS ID (Type) T6SS01033 experimental (Type i3)
Strain Serratia sp. FS14
Replicon chromosome
Sequence Protein sequence (453 a.a.); Nucleotide sequence (1359 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) L085_RS12935
Coordinate (Strand) 2847853..2849211 (+)
NCBI ID WP_044030911.1
RefSeq NZ_CP005927
Uniprot ID A0A6H1E7Z2_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 7.5e-109 19..445
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-452 MLPKQRVAWVEGMLMEPQHFQQQERFFEHLIEARLRSVETFTWGFLTLEIDNGLLEQGKFALKKAKGVFPDGTAFSMPEDIPLPPPLVLGEGCQGKVVCLSVLMDIAGNAQIDLIQDARKSSRFRTMDAEVPDRNHGVSLEGTPRVCTMQLGSLVTRLSLEDAVSSAESVLPVGFVRELTSDRRVLLDERALPPMLDFRAIGWLPAFTTELLGLISQRLESVFRPDVHMTIGGLSELLELLLLQTLSEFNLRISQLLASPQVHPETLFDTLLSLLGRLSIIPGGERLWDRADLVYLHDEPHNCYFQLFASIRRALSLVIEAPAVALPFTDRGDSIYLCPNDSQLRLEKLVFAVSCGLSIEHLRSYFPAQVKLGPVEKIIQLIDLQLPGARLLPMASPPRHIPYYPNSIYFEVDHADPIYKEMMAGSAMALSIVGDFPDLRFDVWGLRQGRVG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9973 - -


  Protein sequence: 453 a.a.    

>T6CP013398 NZ_CP005927:2847853-2849211 [Serratia sp. FS14] [TssK]
MLPKQRVAWVEGMLMEPQHFQQQERFFEHLIEARLRSVETFTWGFLTLEIDNGLLEQGKFALKKAKGVFPDGTAFSMPED
IPLPPPLVLGEGCQGKVVCLSVLMDIAGNAQIDLIQDARKSSRFRTMDAEVPDRNHGVSLEGTPRVCTMQLGSLVTRLSL
EDAVSSAESVLPVGFVRELTSDRRVLLDERALPPMLDFRAIGWLPAFTTELLGLISQRLESVFRPDVHMTIGGLSELLEL
LLLQTLSEFNLRISQLLASPQVHPETLFDTLLSLLGRLSIIPGGERLWDRADLVYLHDEPHNCYFQLFASIRRALSLVIE
APAVALPFTDRGDSIYLCPNDSQLRLEKLVFAVSCGLSIEHLRSYFPAQVKLGPVEKIIQLIDLQLPGARLLPMASPPRH
IPYYPNSIYFEVDHADPIYKEMMAGSAMALSIVGDFPDLRFDVWGLRQGRVG*

  Nucleotide sequence: 1359 bp    

>T6CP013398 NZ_CP005927:2847853-2849211 [Serratia sp. FS14] [TssK]
ATGTTACCTAAACAACGCGTCGCCTGGGTAGAAGGCATGTTGATGGAACCGCAGCATTTCCAGCAGCAGGAACGTTTTTT
CGAGCACTTGATTGAAGCGCGCTTGCGCAGCGTCGAAACCTTCACCTGGGGGTTCCTGACGCTGGAGATCGACAACGGGC
TATTGGAACAGGGCAAGTTTGCGCTGAAGAAAGCCAAGGGCGTTTTCCCCGACGGCACGGCGTTCAGCATGCCTGAGGAT
ATTCCGCTGCCGCCGCCGCTGGTGCTGGGAGAAGGCTGCCAGGGGAAAGTGGTGTGCCTGTCCGTGCTGATGGACATCGC
CGGCAACGCCCAGATCGATCTTATCCAGGATGCGCGAAAAAGCAGCCGTTTTCGCACCATGGACGCCGAGGTGCCGGATC
GCAACCACGGCGTCAGCCTGGAGGGAACGCCGCGCGTGTGCACGATGCAACTGGGCAGCCTGGTGACGCGGCTAAGCCTG
GAGGACGCGGTCAGCAGCGCGGAAAGCGTGCTGCCGGTCGGTTTCGTGCGCGAGCTGACCAGCGACCGTCGGGTGCTGCT
GGATGAGCGCGCCTTGCCGCCGATGCTGGATTTCCGCGCCATCGGCTGGCTGCCCGCTTTCACCACCGAATTGCTTGGGC
TGATCAGCCAGCGTCTGGAGTCGGTTTTTCGCCCGGACGTGCATATGACGATCGGCGGGCTTTCCGAGCTGCTGGAACTG
CTGTTGCTGCAAACCTTGAGCGAGTTCAATTTGCGCATCAGCCAACTGCTGGCCAGCCCGCAGGTGCATCCTGAAACCCT
GTTCGACACGTTGCTGAGCCTGCTGGGGCGGCTCAGCATCATTCCCGGCGGCGAACGCCTCTGGGATCGGGCCGATTTGG
TGTATCTGCACGATGAACCGCACAACTGCTACTTCCAGCTGTTCGCCTCGATTCGCCGCGCGCTGTCGCTGGTGATCGAA
GCGCCGGCGGTGGCGTTGCCGTTTACCGATCGCGGCGACAGCATTTATCTGTGCCCGAACGACTCGCAGCTGCGCCTGGA
AAAACTGGTGTTCGCCGTCAGCTGCGGTTTGTCCATCGAGCATCTGCGCTCGTATTTCCCCGCGCAGGTCAAACTGGGGC
CGGTCGAGAAAATCATTCAGCTGATCGATCTGCAATTACCGGGCGCTCGCTTGTTGCCGATGGCTTCGCCGCCGCGGCAC
ATACCGTATTACCCGAACAGCATCTATTTCGAGGTTGATCATGCCGACCCGATTTATAAGGAAATGATGGCCGGCTCGGC
GATGGCGCTCAGCATCGTGGGTGATTTCCCCGACCTGCGTTTTGACGTCTGGGGATTAAGGCAAGGGAGGGTGGGATGA