Detailed information of component protein


Summary

Component ID T6CP013396
Component protein type TssI
T6SS ID (Type) T6SS01033 experimental (Type i3)
Strain Serratia sp. FS14
Replicon chromosome
Sequence Protein sequence (754 a.a.); Nucleotide sequence (2262 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) L085_RS12905
Coordinate (Strand) 2840713..2842974 (+)
NCBI ID WP_004935351.1
RefSeq NZ_CP005927
Uniprot ID A0A7C8GEI2_9ENTR, A0A0G8BFN8_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 1.6e-76 24..326
Phage_base_V PF04717.14 3.2e-14 379..448
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-753 MPLIEIDNPVLAELNAFPLSFTTKEGLSSNSQYTLEFECEQADVDYESLLGQGISIQIERPDFGARPFYAYVIGASDSGQHQDKFVYKLELSTWLWFLMQNRNSRIFQDLNVLDIIEQIFSRYGFADYRLDIQGTYPTREYCVQFSETDFAFISRLLEDEGIWYYFDHAEDKHTLVITDRQNFDDLDFGYAVLPFMPDSEENRAIREGIQRIQRSRKVRPNEIVLRDFDFQNPRKNLQTKVEESRLGLQNTPLEWYDYAAGYVDTERGENLARLRLEEMQSDGHLLFGESNAVGLMAGKDFSLILHPDANRNRRFKLTRCDYVFVQDGPDSSSDGRNVTCRFNALNDDVPFRPLRETPKPQMPGIQSATVVGAPNSEVHTDKFARIRVHFHWDRYKTTEEDSSCWIRVVQAWAGKGWGVIAMPRVGQEVLVTYVDGDLDRPMVTGIVYNGDNPPPYQLPEYINYSGMVSRSLRFGKPQHASQLTFDDNRNNERVMLHAERDLQTTVERNQATEVGMDKFDIIRRTFTDWFTNHVSYKDYVFSITGFDASIKGVSASMTGVSLTATGVSTSFTGVSTSFTGVSTSFTGVSTSFTGLSTSFTGQSTSCTGVSNSMTGESNSFTSISNSMTGESNSYTTVSTSQTGSSTSFTGVSVSTTGSSTSTTGCSISTTGSSTSTTGCSISTTGSSVSTTGSSVGTTGSSVSSTGSSVSNTGSSVSNTGSSTSTTGVSISYTGASLSETGVDLKKVGMQSKN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9823 - -


  Protein sequence: 754 a.a.    

>T6CP013396 NZ_CP005927:2840713-2842974 [Serratia sp. FS14] [TssI]
MPLIEIDNPVLAELNAFPLSFTTKEGLSSNSQYTLEFECEQADVDYESLLGQGISIQIERPDFGARPFYAYVIGASDSGQ
HQDKFVYKLELSTWLWFLMQNRNSRIFQDLNVLDIIEQIFSRYGFADYRLDIQGTYPTREYCVQFSETDFAFISRLLEDE
GIWYYFDHAEDKHTLVITDRQNFDDLDFGYAVLPFMPDSEENRAIREGIQRIQRSRKVRPNEIVLRDFDFQNPRKNLQTK
VEESRLGLQNTPLEWYDYAAGYVDTERGENLARLRLEEMQSDGHLLFGESNAVGLMAGKDFSLILHPDANRNRRFKLTRC
DYVFVQDGPDSSSDGRNVTCRFNALNDDVPFRPLRETPKPQMPGIQSATVVGAPNSEVHTDKFARIRVHFHWDRYKTTEE
DSSCWIRVVQAWAGKGWGVIAMPRVGQEVLVTYVDGDLDRPMVTGIVYNGDNPPPYQLPEYINYSGMVSRSLRFGKPQHA
SQLTFDDNRNNERVMLHAERDLQTTVERNQATEVGMDKFDIIRRTFTDWFTNHVSYKDYVFSITGFDASIKGVSASMTGV
SLTATGVSTSFTGVSTSFTGVSTSFTGVSTSFTGLSTSFTGQSTSCTGVSNSMTGESNSFTSISNSMTGESNSYTTVSTS
QTGSSTSFTGVSVSTTGSSTSTTGCSISTTGSSTSTTGCSISTTGSSVSTTGSSVGTTGSSVSSTGSSVSNTGSSVSNTG
SSTSTTGVSISYTGASLSETGVDLKKVGMQSKN*

  Nucleotide sequence: 2262 bp    

>T6CP013396 NZ_CP005927:2840713-2842974 [Serratia sp. FS14] [TssI]
ATGCCTTTAATCGAAATTGATAACCCGGTGTTAGCCGAATTAAATGCGTTTCCACTCAGCTTCACCACCAAAGAAGGGTT
GTCGAGCAACTCGCAATATACGCTCGAATTCGAATGTGAACAGGCGGACGTTGATTATGAATCTCTGCTGGGTCAAGGGA
TCAGCATTCAAATAGAAAGGCCGGATTTCGGCGCGCGGCCGTTTTACGCTTACGTGATCGGCGCCTCCGATTCGGGGCAG
CATCAGGATAAGTTCGTTTATAAGCTGGAGCTGAGCACCTGGCTGTGGTTTTTGATGCAAAACCGCAACAGCCGCATTTT
CCAGGATTTGAACGTGCTCGACATCATCGAGCAAATCTTCTCGCGCTACGGTTTTGCCGACTACCGTCTGGATATTCAAG
GCACTTATCCGACGCGTGAATATTGCGTGCAGTTTTCCGAAACGGATTTCGCGTTTATCAGCCGCCTGCTGGAAGACGAA
GGCATCTGGTATTACTTCGATCACGCCGAGGATAAACACACGCTGGTGATCACCGACCGGCAGAATTTCGACGATCTGGA
TTTCGGTTACGCCGTGTTGCCGTTCATGCCGGACAGCGAAGAAAACCGCGCCATCCGCGAAGGGATCCAGCGCATCCAGC
GCTCCCGCAAAGTGCGCCCGAATGAAATCGTGCTGCGCGACTTTGACTTCCAGAACCCGCGCAAGAACCTGCAAACCAAG
GTGGAAGAGAGCCGCCTCGGCCTGCAGAACACCCCGCTGGAGTGGTACGACTACGCGGCGGGTTATGTGGATACCGAACG
CGGTGAAAACCTGGCGCGGCTGCGCCTGGAAGAAATGCAAAGCGACGGCCATCTGCTGTTTGGCGAGAGCAACGCCGTCG
GGCTGATGGCCGGCAAGGATTTCTCCTTGATTTTGCACCCGGACGCCAACCGCAACCGCCGCTTCAAGCTGACTCGCTGC
GACTATGTGTTCGTGCAAGACGGCCCGGACAGCAGCAGCGACGGCCGCAACGTCACCTGCCGTTTCAATGCGTTGAACGA
CGACGTGCCGTTCCGCCCGCTGCGCGAAACGCCAAAGCCGCAGATGCCGGGCATCCAGAGCGCCACCGTGGTCGGCGCGC
CCAACTCCGAAGTGCATACCGACAAATTTGCGCGCATCCGCGTGCATTTCCACTGGGATCGCTACAAAACCACCGAGGAA
GACAGCTCTTGCTGGATCCGCGTGGTGCAGGCCTGGGCGGGGAAAGGCTGGGGCGTGATCGCCATGCCCCGCGTCGGCCA
GGAAGTGCTGGTGACCTATGTCGACGGCGATCTCGATCGTCCGATGGTGACCGGGATTGTGTATAACGGCGACAACCCGC
CGCCTTATCAGTTGCCTGAATACATCAACTACTCGGGCATGGTGTCGCGTTCGCTGCGCTTCGGCAAGCCGCAGCATGCC
AGCCAGTTGACCTTCGATGACAACCGCAACAACGAACGCGTCATGCTGCATGCCGAACGCGATCTGCAAACCACGGTGGA
GCGCAACCAGGCCACCGAGGTGGGAATGGACAAGTTCGACATCATCCGCCGCACCTTTACGGACTGGTTCACCAACCACG
TCTCTTACAAGGATTACGTCTTCAGCATTACCGGGTTTGACGCCTCGATTAAAGGCGTCAGCGCGTCGATGACCGGCGTC
AGCCTCACCGCCACCGGCGTGAGCACCTCGTTTACCGGCGTCAGCACCTCGTTCACCGGCGTGAGCACGTCATTTACCGG
CGTGAGCACTTCGTTCACCGGGCTGAGCACCTCGTTTACCGGGCAGAGCACCAGCTGCACCGGCGTATCAAACTCGATGA
CCGGCGAAAGCAACTCCTTCACCAGCATCAGCAACAGCATGACCGGCGAAAGCAACAGCTACACCACGGTCAGCACCAGC
CAGACCGGCAGCAGCACCAGCTTTACCGGCGTCAGCGTCAGCACCACCGGATCGTCGACCAGCACCACCGGCTGCAGCAT
CAGCACCACCGGATCGTCGACCAGCACCACCGGCTGCAGCATCAGCACCACCGGCAGCAGCGTGAGCACCACCGGCAGCA
GCGTCGGCACCACCGGCAGCAGCGTCAGCAGCACCGGCAGCAGCGTCAGCAATACCGGCAGCAGCGTCAGCAATACCGGC
AGCAGCACCAGCACGACAGGGGTGTCGATCAGCTATACCGGCGCGTCACTGTCCGAGACCGGCGTCGATTTGAAAAAAGT
CGGGATGCAAAGCAAAAACTAA