Detailed information of component protein


Summary

Component ID T6CP013395
Component protein type TssH
T6SS ID (Type) T6SS01033 experimental (Type i3)
Strain Serratia sp. FS14
Replicon chromosome
Sequence Protein sequence (862 a.a.); Nucleotide sequence (2586 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) L085_RS12900
Coordinate (Strand) 2838063..2840648 (+)
NCBI ID WP_021505820.1
RefSeq NZ_CP005927
Uniprot ID UPI0003970B42
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.1e-35 594..761
AAA_lid_9 PF17871.3 9.6e-27 365..459
AAA PF00004.31 5.8e-10 225..356
ClpB_D2-small PF10431.11 2.9e-08 766..838
Clp_N PF02861.22 1.1e-06 22..73
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-861 VYQRERLFSRLGHFAYQSFVEATKLCRTFRHEYVELEHWLKVLVDKERGDLPLILAHYAINSQRISDALDRILHTLPNRTNAVVDLSTQLETVVERGLLMSQLAETPSGGVRTIHILVGILQDPTLQRSLYRLSDEFKKLPIPQLFDDYPAILAESVEHEEEEEEVYSAHGDAPETSETVDILDKWCADLTRQARDGEIDPVIGREAELRQVIDILLRRRQNNPILVGEAGVGKTAVAEALACKIAQGQVPPLLQGARLLSLDLGRMQAGASMRGEFESRLKALIDAIAHSAVPVILFCDEAHTLVGAGGQAGTGDAVNLLKPMLARGALRMVAATTWSEYKQFIEPDAALTRRFQYVLVSEPDEENAVNMMRAIAPHFAQHHSVKIRESALQAAVHLSLRHLPSRQLPDKAISLLDTACARVALSQHALPEKIESLEAGLAVKRTEMNGLQEESKFDDLALSRITELQQTLSDMEGELAALRQRQAQEQQAVTTLLDAERQSPERLPQLASELGALQDGGLPLVYPWVDDRVVAEVLSDWTGIPTGRMLQSDLDNALNLNQLLSRQIFGQQTAIDEIAQAVRISRAGIQAHDRPLGVFMLSGPSGVGKTETAFALAEAMYGGAHNLIVFNMSEFQESHTVSTLKGAPPGYVGYGKGGKLTEAVRRKPYSIVLLDEFDKAHPDIHEAFYQVFDKGVMEDGEGRMISFRQCFILMTSNIGAGEIEATLAETPDLKTEALRPMLHDVLARFFPAALLARMNVIPYVPLSTEAITHIATKQISRLQQRLHKEVGVSLVLEGDIPGWIAKRISAHPSRGRAVESLLQQAILPPISNEVLQRKRTGQELQNIQLMVENDSLSVYFD


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9866 - -


  Protein sequence: 862 a.a.    

>T6CP013395 NZ_CP005927:2838063-2840648 [Serratia sp. FS14] [TssH]
VYQRERLFSRLGHFAYQSFVEATKLCRTFRHEYVELEHWLKVLVDKERGDLPLILAHYAINSQRISDALDRILHTLPNRT
NAVVDLSTQLETVVERGLLMSQLAETPSGGVRTIHILVGILQDPTLQRSLYRLSDEFKKLPIPQLFDDYPAILAESVEHE
EEEEEVYSAHGDAPETSETVDILDKWCADLTRQARDGEIDPVIGREAELRQVIDILLRRRQNNPILVGEAGVGKTAVAEA
LACKIAQGQVPPLLQGARLLSLDLGRMQAGASMRGEFESRLKALIDAIAHSAVPVILFCDEAHTLVGAGGQAGTGDAVNL
LKPMLARGALRMVAATTWSEYKQFIEPDAALTRRFQYVLVSEPDEENAVNMMRAIAPHFAQHHSVKIRESALQAAVHLSL
RHLPSRQLPDKAISLLDTACARVALSQHALPEKIESLEAGLAVKRTEMNGLQEESKFDDLALSRITELQQTLSDMEGELA
ALRQRQAQEQQAVTTLLDAERQSPERLPQLASELGALQDGGLPLVYPWVDDRVVAEVLSDWTGIPTGRMLQSDLDNALNL
NQLLSRQIFGQQTAIDEIAQAVRISRAGIQAHDRPLGVFMLSGPSGVGKTETAFALAEAMYGGAHNLIVFNMSEFQESHT
VSTLKGAPPGYVGYGKGGKLTEAVRRKPYSIVLLDEFDKAHPDIHEAFYQVFDKGVMEDGEGRMISFRQCFILMTSNIGA
GEIEATLAETPDLKTEALRPMLHDVLARFFPAALLARMNVIPYVPLSTEAITHIATKQISRLQQRLHKEVGVSLVLEGDI
PGWIAKRISAHPSRGRAVESLLQQAILPPISNEVLQRKRTGQELQNIQLMVENDSLSVYFD*

  Nucleotide sequence: 2586 bp    

>T6CP013395 NZ_CP005927:2838063-2840648 [Serratia sp. FS14] [TssH]
GTGTATCAACGAGAACGTCTTTTTTCGCGATTGGGCCACTTTGCCTATCAGTCGTTCGTCGAAGCGACCAAGCTGTGCCG
AACCTTCAGGCACGAATACGTGGAGCTGGAACACTGGCTGAAAGTCCTGGTGGACAAGGAGCGCGGCGACCTGCCGCTGA
TCCTGGCGCACTACGCCATCAACAGTCAGCGCATCAGCGATGCGTTGGATCGCATACTTCATACCTTGCCTAACCGGACG
AATGCGGTGGTGGATCTGTCGACGCAACTGGAAACGGTGGTGGAAAGAGGGCTGCTGATGAGCCAGCTCGCCGAAACGCC
GTCCGGCGGGGTGCGCACCATTCATATCCTGGTCGGCATTCTGCAGGATCCCACGTTGCAGCGCAGCCTGTACCGGCTGA
GCGACGAGTTCAAAAAACTGCCGATCCCGCAGCTGTTCGACGATTATCCGGCGATTCTGGCGGAGTCCGTCGAGCATGAG
GAAGAGGAAGAAGAGGTCTACAGCGCCCACGGCGATGCGCCGGAGACGTCCGAGACGGTCGATATTCTCGATAAATGGTG
CGCCGATCTGACCCGCCAGGCGCGCGACGGTGAAATCGATCCGGTGATTGGCCGCGAAGCGGAGCTGCGCCAGGTGATCG
ACATCTTGCTGCGTCGCCGGCAGAACAACCCGATTTTGGTGGGCGAAGCCGGGGTCGGCAAAACGGCGGTGGCGGAAGCG
CTGGCCTGCAAGATCGCCCAGGGGCAGGTGCCGCCGCTGCTGCAGGGCGCCCGGCTGCTGTCTTTGGATCTGGGGCGCAT
GCAGGCCGGGGCGAGCATGAGGGGCGAATTCGAATCGCGCCTGAAAGCGCTGATCGACGCCATCGCGCATTCGGCGGTGC
CGGTGATCCTGTTTTGCGACGAGGCGCATACGCTGGTGGGCGCCGGCGGGCAGGCCGGTACCGGCGACGCCGTCAACCTG
TTGAAACCGATGCTGGCCAGGGGGGCGCTGCGCATGGTGGCGGCGACGACCTGGTCGGAATACAAACAGTTCATCGAGCC
GGACGCCGCGCTGACGCGCCGTTTCCAGTACGTGTTGGTTTCTGAACCCGACGAAGAGAATGCGGTGAACATGATGCGCG
CCATCGCCCCGCATTTTGCGCAGCACCACAGCGTCAAGATCCGCGAGTCGGCGCTGCAGGCGGCGGTGCATTTGTCGCTG
CGCCATCTGCCGTCGCGACAACTGCCGGACAAAGCCATCAGCTTGCTGGACACCGCCTGCGCGCGGGTGGCGCTGAGCCA
GCATGCGCTGCCTGAAAAAATCGAGTCGCTCGAGGCCGGGTTGGCGGTGAAGCGCACCGAAATGAACGGCCTGCAGGAGG
AAAGCAAATTCGACGATCTGGCGCTCAGCCGCATCACTGAATTGCAGCAGACCCTCAGCGATATGGAAGGCGAACTGGCT
GCGCTGCGTCAGCGGCAGGCGCAGGAGCAACAGGCGGTCACCACCTTGCTCGACGCGGAGCGGCAGTCGCCGGAGCGCTT
GCCGCAGTTGGCCTCCGAGCTGGGAGCCTTGCAAGACGGTGGCCTGCCGTTGGTGTATCCGTGGGTGGATGACCGCGTCG
TGGCGGAGGTGTTGTCGGATTGGACCGGCATCCCCACCGGCCGCATGCTGCAAAGCGATCTGGACAATGCGCTCAATCTT
AACCAACTGCTGAGCCGCCAGATATTCGGCCAGCAGACGGCGATCGATGAAATCGCGCAGGCGGTGCGCATCTCCCGCGC
CGGCATTCAGGCGCACGATCGGCCATTGGGCGTTTTCATGCTGTCCGGCCCGAGCGGCGTTGGCAAAACGGAGACCGCGT
TTGCGCTGGCGGAGGCGATGTACGGCGGCGCGCATAACCTGATCGTCTTCAATATGAGCGAGTTTCAGGAATCGCATACC
GTTTCCACCCTGAAAGGGGCACCGCCGGGCTATGTCGGCTACGGCAAGGGCGGCAAGTTGACGGAGGCGGTGCGCCGCAA
ACCTTATTCTATCGTCTTGCTCGACGAATTCGACAAGGCGCATCCCGATATCCACGAGGCGTTTTATCAAGTCTTCGACA
AGGGCGTGATGGAAGACGGTGAGGGCCGCATGATCAGCTTCCGCCAGTGTTTCATTTTAATGACGAGCAATATCGGCGCC
GGCGAAATAGAAGCCACGCTGGCGGAAACGCCGGATCTGAAAACCGAAGCGCTGCGGCCGATGCTGCACGACGTGCTGGC
GCGCTTCTTCCCGGCGGCGCTGTTGGCGCGCATGAACGTCATTCCCTACGTGCCGCTTTCTACCGAAGCGATAACCCATA
TCGCCACCAAACAGATTTCGCGTTTACAACAGCGTTTGCACAAAGAAGTGGGCGTGTCGCTGGTGCTGGAAGGCGACATT
CCAGGCTGGATAGCCAAACGCATCAGCGCCCATCCTTCGCGCGGCAGAGCGGTCGAGTCGCTGCTGCAGCAGGCGATTTT
GCCGCCCATCAGCAATGAAGTGCTGCAGCGCAAACGGACGGGACAGGAACTGCAGAATATCCAACTCATGGTCGAGAACG
ATAGTTTAAGTGTTTATTTCGACTGA