Detailed information of component protein


Summary

Component ID T6CP013393
Component protein type TssF
T6SS ID (Type) T6SS01033 experimental (Type i3)
Strain Serratia sp. FS14
Replicon chromosome
Sequence Protein sequence (614 a.a.); Nucleotide sequence (1842 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) L085_RS12890
Coordinate (Strand) 2835184..2837025 (+)
NCBI ID WP_015378390.1
RefSeq NZ_CP005927
Uniprot ID UPI0002AF24D6
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 5.6e-123 3..600
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-613 MFSERFLQLYNDELRYFREAGRQFASSHPQVAQHLGMHIDGVLDPFVERLLEGSAFLCTRIQEKLNNEQPEFALQMLSRLAPLWYTPVPAIATVAIKPDLSFPQWHSQVDLPRGSRMTLNDISLNNKPATFTTARHIKVQPVEISLAECEILPPHHLPDGAARHMQDCSAYVRICLTTHGVLPVSELDLEPLHLTLAEDTVRANQLLAALLNRTLRIVLWAKSDDRPIVKVLPPGSLRLGGVSDEEALLPTVVGELPGNRLMREYFAAPSRFFSLELHGVQDFLRQCERVHEFEILFALEQRPLTLIGRVNARDFHLFATPVINLYRRHCSPVLLTDERTEHQLVVDRLNTSLYEIHSVKQVKGMLPDGNPVIFSSLQADVQYDCEREPAGYTLHRRREPSPSKYNNPHLPNEDTFIAISPGKSGIDIDDITSLSVEALVCERHLVPAHLQQPHFQLETAMPIHQVEIVRYPSNPVAVPNISQAWQAIQMLASNPLRHARPDVQDCSALLRDWLSLFCHQDDSSQRKRIASIKNAWVEHHFERNQGPGPLAWIRGAEIAVNLSANHHADHGAYLFGKILHHALSQYGDLNQTLSMKLLLDGETHADWGALYYG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9861 - -


  Protein sequence: 614 a.a.    

>T6CP013393 NZ_CP005927:2835184-2837025 [Serratia sp. FS14] [TssF]
MFSERFLQLYNDELRYFREAGRQFASSHPQVAQHLGMHIDGVLDPFVERLLEGSAFLCTRIQEKLNNEQPEFALQMLSRL
APLWYTPVPAIATVAIKPDLSFPQWHSQVDLPRGSRMTLNDISLNNKPATFTTARHIKVQPVEISLAECEILPPHHLPDG
AARHMQDCSAYVRICLTTHGVLPVSELDLEPLHLTLAEDTVRANQLLAALLNRTLRIVLWAKSDDRPIVKVLPPGSLRLG
GVSDEEALLPTVVGELPGNRLMREYFAAPSRFFSLELHGVQDFLRQCERVHEFEILFALEQRPLTLIGRVNARDFHLFAT
PVINLYRRHCSPVLLTDERTEHQLVVDRLNTSLYEIHSVKQVKGMLPDGNPVIFSSLQADVQYDCEREPAGYTLHRRREP
SPSKYNNPHLPNEDTFIAISPGKSGIDIDDITSLSVEALVCERHLVPAHLQQPHFQLETAMPIHQVEIVRYPSNPVAVPN
ISQAWQAIQMLASNPLRHARPDVQDCSALLRDWLSLFCHQDDSSQRKRIASIKNAWVEHHFERNQGPGPLAWIRGAEIAV
NLSANHHADHGAYLFGKILHHALSQYGDLNQTLSMKLLLDGETHADWGALYYG*

  Nucleotide sequence: 1842 bp    

>T6CP013393 NZ_CP005927:2835184-2837025 [Serratia sp. FS14] [TssF]
ATGTTCAGTGAGCGCTTTCTCCAATTATATAATGATGAGCTGCGTTATTTTCGCGAGGCCGGTCGTCAGTTCGCCTCTTC
TCATCCCCAGGTCGCCCAGCATTTAGGCATGCATATCGACGGCGTGCTGGATCCTTTCGTTGAGCGTCTGTTGGAGGGCT
CCGCGTTCCTTTGCACCCGCATCCAGGAAAAGCTGAACAATGAGCAGCCGGAATTTGCCCTGCAAATGCTCTCACGCCTG
GCGCCGCTGTGGTATACGCCGGTTCCCGCGATCGCCACCGTCGCGATTAAGCCCGATCTCTCTTTTCCCCAGTGGCACAG
CCAGGTTGACCTGCCGCGCGGGAGCCGCATGACCCTCAACGATATCTCGCTGAACAACAAACCCGCCACGTTCACCACGG
CGCGGCATATTAAAGTACAGCCGGTTGAGATTTCACTGGCGGAATGCGAGATTTTGCCGCCGCACCATTTGCCTGACGGC
GCCGCCAGACACATGCAGGATTGCTCGGCCTACGTCAGGATATGCCTGACGACGCACGGCGTGCTTCCCGTCTCGGAGCT
GGATCTCGAGCCGCTGCACCTGACGCTGGCGGAAGATACGGTGCGGGCCAATCAACTGCTGGCCGCGTTGCTTAATCGCA
CCTTGCGCATCGTGCTATGGGCGAAAAGCGACGACCGGCCAATCGTCAAAGTCTTGCCGCCGGGCAGCTTGCGCCTGGGC
GGCGTCAGCGATGAAGAAGCCTTGTTGCCCACCGTGGTGGGGGAATTGCCCGGCAACCGGCTGATGCGTGAATACTTCGC
CGCGCCAAGCCGCTTCTTCAGCCTGGAGCTGCATGGCGTGCAGGATTTTCTGCGCCAATGTGAACGCGTTCACGAGTTCG
AGATCTTGTTCGCGCTGGAGCAACGCCCACTCACTCTGATCGGTCGCGTCAACGCCAGGGATTTTCATCTTTTCGCGACC
CCGGTCATCAACCTGTATCGCCGCCATTGCTCGCCGGTGCTGCTGACGGATGAGCGCACGGAGCACCAGCTGGTGGTCGA
TCGTTTGAACACCTCGCTGTATGAGATACACAGCGTAAAACAGGTGAAAGGCATGCTGCCCGACGGCAACCCGGTGATTT
TCTCTTCGCTGCAGGCCGACGTGCAGTACGACTGCGAGCGGGAGCCGGCCGGTTATACGCTGCACCGTCGCCGGGAGCCG
TCGCCCTCCAAGTACAACAATCCGCACCTGCCCAACGAAGATACCTTCATCGCCATCTCGCCGGGCAAAAGCGGCATCGA
CATCGACGACATCACGTCGCTCAGCGTCGAGGCGCTGGTATGCGAACGGCATCTGGTGCCGGCGCACCTTCAGCAGCCGC
ATTTCCAGCTGGAAACGGCGATGCCGATCCACCAGGTGGAGATCGTCCGCTACCCGAGCAACCCGGTCGCGGTACCGAAC
ATCAGCCAGGCGTGGCAGGCGATTCAGATGCTGGCCTCCAATCCTCTGCGCCATGCGCGCCCCGACGTTCAGGATTGTTC
GGCGCTGTTGCGCGACTGGCTGTCGTTGTTCTGCCATCAGGATGACTCCAGCCAGCGCAAGCGCATCGCCAGCATCAAAA
ACGCCTGGGTGGAGCACCACTTCGAACGCAATCAGGGGCCGGGGCCGCTGGCCTGGATCCGCGGGGCCGAGATCGCCGTC
AACTTAAGCGCCAACCATCATGCCGACCACGGCGCCTATCTGTTCGGCAAAATATTGCACCACGCGTTGAGCCAATACGG
CGACCTGAACCAAACGTTAAGCATGAAGCTGTTGCTGGATGGGGAAACCCACGCCGACTGGGGGGCGCTCTACTATGGCT
GA