Detailed information of component protein


Summary

Component ID T6CP013390
Component protein type TssC
T6SS ID (Type) T6SS01033 experimental (Type i3)
Strain Serratia sp. FS14
Replicon chromosome
Sequence Protein sequence (509 a.a.); Nucleotide sequence (1527 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) L085_RS12875
Coordinate (Strand) 2832362..2833888 (+)
NCBI ID WP_004935371.1
RefSeq NZ_CP005927
Uniprot ID A0A6I4GYS9_SERMA
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 7.9e-127 76..377
VipB_2 PF18945.2 1.1e-43 388..499
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-508 MRARQRRYSAKQQATAVAEVETQDTENELDGLLKRSFRPRTNEASEAVRRAIGTLSEYANKGKVKVSQDVVLTIESLIAQIDEQLSQQMNNILHHKEFQKLESAWQGLSYLVDNTNVSETLKIRVLNISQDELTRNLRRYRGSAWDQSPVFKQIYEQEYGQFGGEPFGCIIGDFEFDHSPMSVTLLTELAKISAASHCPFISAASPSLLQMSKWNELGNPRDIGKIFTTPEYASWRRLRESNDSRYLVLTMPRFLSRLPYGAKTNPIEEFAFEESVRPDVDDDFSWANSAYAMGVNINRAFHEYGWCSKIRGIESGGSVEELPAYAFPSDEGGYELTCPTEVAISDRREQELSDAGFLPLVYRKHSDFAAFIGSCTMHAPAKYEDPDATANAKLSSRLPYIFATCRFAHYLKCIVRDKIGSFRSRDDMQLWLNDWLMNYVDGDPSVSTEATKARRPLAAAEVRVEDVEDDPGYYRAHFYLRPHYQLEGMTVSLRLVSKLPSAKKDGSR


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9450 - -


  Protein sequence: 509 a.a.    

>T6CP013390 NZ_CP005927:2832362-2833888 [Serratia sp. FS14] [TssC]
MRARQRRYSAKQQATAVAEVETQDTENELDGLLKRSFRPRTNEASEAVRRAIGTLSEYANKGKVKVSQDVVLTIESLIAQ
IDEQLSQQMNNILHHKEFQKLESAWQGLSYLVDNTNVSETLKIRVLNISQDELTRNLRRYRGSAWDQSPVFKQIYEQEYG
QFGGEPFGCIIGDFEFDHSPMSVTLLTELAKISAASHCPFISAASPSLLQMSKWNELGNPRDIGKIFTTPEYASWRRLRE
SNDSRYLVLTMPRFLSRLPYGAKTNPIEEFAFEESVRPDVDDDFSWANSAYAMGVNINRAFHEYGWCSKIRGIESGGSVE
ELPAYAFPSDEGGYELTCPTEVAISDRREQELSDAGFLPLVYRKHSDFAAFIGSCTMHAPAKYEDPDATANAKLSSRLPY
IFATCRFAHYLKCIVRDKIGSFRSRDDMQLWLNDWLMNYVDGDPSVSTEATKARRPLAAAEVRVEDVEDDPGYYRAHFYL
RPHYQLEGMTVSLRLVSKLPSAKKDGSR*

  Nucleotide sequence: 1527 bp    

>T6CP013390 NZ_CP005927:2832362-2833888 [Serratia sp. FS14] [TssC]
ATGAGAGCGAGGCAACGACGCTATTCGGCTAAGCAGCAGGCTACGGCAGTCGCTGAAGTTGAAACGCAGGACACGGAAAA
TGAGCTTGACGGTTTGCTCAAGCGTTCATTCCGGCCCAGAACGAACGAGGCTTCGGAAGCGGTTCGTCGGGCTATCGGCA
CGCTGTCCGAATATGCCAACAAAGGCAAGGTCAAGGTCAGCCAGGATGTCGTATTGACCATTGAATCGTTGATTGCCCAG
ATCGACGAACAGCTTTCGCAACAGATGAACAATATCTTGCACCACAAGGAGTTCCAGAAGCTGGAGTCCGCCTGGCAAGG
TCTGAGTTATCTGGTCGATAACACCAACGTCAGCGAAACGCTCAAGATCCGGGTGTTGAACATCAGTCAGGATGAGCTGA
CGCGCAATTTGCGCCGCTATCGGGGTTCCGCCTGGGATCAAAGCCCGGTGTTCAAACAGATTTACGAACAGGAATATGGT
CAGTTCGGCGGCGAGCCGTTCGGTTGCATCATCGGCGATTTTGAATTCGATCACAGCCCGATGAGCGTCACGCTGCTGAC
CGAGTTGGCGAAAATTTCCGCGGCGTCGCACTGTCCGTTCATTTCCGCCGCGTCGCCGTCGCTGCTGCAGATGAGCAAGT
GGAACGAACTGGGCAACCCGCGGGATATCGGCAAGATTTTCACCACGCCGGAATATGCGTCCTGGCGCCGCCTGCGCGAA
AGCAACGACTCGCGTTACCTGGTGTTGACGATGCCGCGTTTCCTGTCGCGTTTGCCTTACGGGGCGAAAACCAACCCGAT
CGAAGAGTTCGCTTTCGAGGAGTCCGTCAGGCCGGATGTGGATGATGATTTTTCCTGGGCCAACTCGGCGTATGCGATGG
GCGTCAACATCAACCGCGCGTTCCATGAGTACGGCTGGTGTTCGAAGATTCGCGGCATCGAATCCGGCGGCTCGGTGGAA
GAACTGCCCGCCTACGCGTTTCCTTCCGATGAGGGCGGATATGAACTGACGTGCCCGACGGAAGTGGCCATTTCCGATCG
GCGCGAGCAAGAGCTTTCCGACGCCGGGTTCTTGCCCCTGGTCTATCGCAAGCATTCCGATTTCGCCGCTTTTATCGGTT
CTTGCACCATGCACGCGCCGGCGAAATACGAGGATCCCGACGCGACGGCCAACGCCAAGCTGTCTTCGCGCTTGCCTTAT
ATTTTCGCCACGTGCCGATTCGCGCACTATTTGAAATGCATCGTGCGTGACAAAATCGGTTCTTTCCGTTCCAGAGACGA
TATGCAGCTGTGGCTGAATGACTGGCTGATGAACTACGTCGATGGCGATCCTTCCGTATCGACCGAGGCGACCAAGGCGC
GTCGTCCATTAGCCGCCGCCGAGGTGCGCGTTGAGGATGTGGAAGATGATCCGGGTTATTACCGCGCGCATTTCTATTTG
CGCCCGCATTACCAGTTGGAAGGCATGACCGTGTCCTTGCGACTTGTATCAAAACTTCCGTCAGCCAAAAAAGATGGGAG
CAGATAA