Detailed information of component protein


Summary

Component ID T6CP013354
Component protein type TssI
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (688 a.a.); Nucleotide sequence (2064 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 22852..24915 (-)
NCBI ID 1185549785
GenBank KY319184
Uniprot ID A0A1W6EUL6_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
Phage_GPD PF05954.13 8.8e-46 30..336
Phage_base_V PF04717.14 1.3e-17 384..450
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-687 MNELIDAQGSYLVIQDANGNEFVASTLSVTEQINQHYEWQADIIVSDSSPADWIGTEVSCYVYNVIGDSRTSLRQYQGYVVKAQAQSQRIDSSYYGIKLTVQPWLFLLKHSRQCRVFQESTAQDIVTSIFDELGFSGKYTVNSMPSTSREYCVQFGESDFEFVTRLLAEDGVHFYFGKDANAAKLYLQEAQMSFEQSDMATLDYAAAPSGDYDVLDTWQREYAFHSASLEIAGYDYSQSKVVTSGAKASGYSVSGNTKLKEYRYPTASITNDFSSLNSTLGTLQRGQLDSGYDRVNAKTQSADLCVGQYLKLAAHSDSAEEGNYLVTELHYQFENQKGNAFSAQAELVCVPEDQVFYPPAKARPVLHGLQSAVVAGSTESEPASDTSGRVRIKFHWDDETGDKTSCWVRVAQGMAGSGYGMQFLPRAGQEVLVSFINGDPDQPVVVASVYNSTNTPPYPTENTTESGVKTKLAGESNELRFDDKKDNELLYLHAAKDFTSEVVNDHSETVGGEMTLAVTKNLTETIEQSHSLSAKEGITLTTEKSYALTVTESITQDGKDITLTGSDSLTLKVGDSSIVMSSDKIEISSSTIALTADSAISLSGGDISQSGDSISLDSDGSLSASSGSSMSLSAGSSFTASASSSATVSGLNATLSADVTATVSGSAKAELSSDGQASISGALVMVN


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9903 - -


  Protein sequence: 688 a.a.    

>T6CP013354 KY319184:c24915-22852 [Vibrio fluvialis] [TssI]
MNELIDAQGSYLVIQDANGNEFVASTLSVTEQINQHYEWQADIIVSDSSPADWIGTEVSCYVYNVIGDSRTSLRQYQGYV
VKAQAQSQRIDSSYYGIKLTVQPWLFLLKHSRQCRVFQESTAQDIVTSIFDELGFSGKYTVNSMPSTSREYCVQFGESDF
EFVTRLLAEDGVHFYFGKDANAAKLYLQEAQMSFEQSDMATLDYAAAPSGDYDVLDTWQREYAFHSASLEIAGYDYSQSK
VVTSGAKASGYSVSGNTKLKEYRYPTASITNDFSSLNSTLGTLQRGQLDSGYDRVNAKTQSADLCVGQYLKLAAHSDSAE
EGNYLVTELHYQFENQKGNAFSAQAELVCVPEDQVFYPPAKARPVLHGLQSAVVAGSTESEPASDTSGRVRIKFHWDDET
GDKTSCWVRVAQGMAGSGYGMQFLPRAGQEVLVSFINGDPDQPVVVASVYNSTNTPPYPTENTTESGVKTKLAGESNELR
FDDKKDNELLYLHAAKDFTSEVVNDHSETVGGEMTLAVTKNLTETIEQSHSLSAKEGITLTTEKSYALTVTESITQDGKD
ITLTGSDSLTLKVGDSSIVMSSDKIEISSSTIALTADSAISLSGGDISQSGDSISLDSDGSLSASSGSSMSLSAGSSFTA
SASSSATVSGLNATLSADVTATVSGSAKAELSSDGQASISGALVMVN*

  Nucleotide sequence: 2064 bp    

>T6CP013354 KY319184:c24915-22852 [Vibrio fluvialis] [TssI]
ATGAATGAATTGATTGATGCGCAAGGCAGCTATCTGGTGATTCAGGATGCCAACGGCAATGAGTTTGTGGCTTCAACCCT
GAGTGTGACTGAGCAGATCAACCAGCACTATGAGTGGCAAGCCGACATCATCGTGTCTGATTCTTCGCCCGCGGATTGGA
TTGGCACTGAAGTCAGCTGTTATGTCTACAACGTGATTGGCGATTCGCGCACCAGCCTGCGTCAGTACCAAGGCTATGTG
GTGAAAGCTCAGGCTCAGTCGCAACGGATTGATTCAAGTTACTACGGCATCAAACTGACTGTTCAGCCATGGCTGTTCCT
GCTCAAGCATTCACGCCAGTGCCGCGTATTTCAGGAGTCAACCGCGCAGGACATCGTGACGTCCATTTTCGATGAGCTGG
GCTTTAGCGGTAAGTACACCGTCAACAGCATGCCATCGACCAGTCGTGAATATTGCGTTCAGTTCGGTGAGTCGGATTTT
GAGTTTGTCACGCGCTTACTCGCCGAAGATGGCGTGCATTTTTACTTCGGCAAAGATGCCAACGCGGCAAAACTCTATCT
GCAGGAAGCGCAGATGTCGTTTGAACAAAGCGACATGGCGACGCTGGATTACGCCGCCGCACCTTCGGGTGATTACGATG
TGTTAGATACGTGGCAGCGTGAGTATGCGTTTCACAGCGCCTCACTGGAAATTGCCGGTTACGACTACTCACAATCGAAA
GTGGTGACCAGCGGCGCCAAGGCGTCGGGCTACTCTGTCTCCGGTAACACCAAACTCAAAGAGTACCGTTATCCGACGGC
ATCGATCACCAATGATTTCAGTAGCCTGAACTCAACCCTTGGCACGCTGCAGCGTGGTCAGCTTGATTCTGGCTATGACC
GTGTTAACGCCAAGACACAATCGGCAGATTTGTGTGTCGGTCAGTATCTGAAACTGGCGGCGCATTCAGACAGTGCCGAA
GAAGGCAATTATTTGGTGACCGAGCTGCATTACCAGTTTGAAAACCAAAAAGGCAATGCGTTCAGCGCGCAGGCTGAGTT
GGTGTGTGTGCCAGAAGATCAGGTGTTCTATCCGCCAGCGAAAGCTCGGCCCGTATTACACGGCCTGCAATCTGCGGTTG
TGGCGGGCAGTACTGAGAGTGAACCTGCCAGTGATACGTCTGGTCGCGTGCGGATCAAATTCCATTGGGATGACGAAACC
GGCGACAAAACCAGTTGCTGGGTTCGCGTCGCTCAAGGCATGGCCGGTAGCGGCTACGGCATGCAATTTCTGCCACGTGC
GGGTCAGGAAGTCTTGGTGAGTTTCATCAACGGCGATCCGGATCAGCCCGTGGTGGTGGCGAGTGTCTATAACTCGACCA
ACACTCCACCATACCCAACAGAAAACACCACTGAAAGTGGCGTGAAAACCAAGCTGGCGGGCGAGTCAAACGAGCTGCGT
TTCGACGACAAGAAAGACAACGAGCTGCTGTATCTGCACGCTGCCAAGGACTTCACCAGTGAAGTCGTGAACGATCACAG
CGAAACCGTGGGTGGAGAAATGACCTTGGCGGTCACCAAGAACCTGACGGAAACCATTGAACAGTCACACAGCCTGTCGG
CCAAAGAGGGCATCACGCTGACGACGGAAAAATCGTATGCGCTGACCGTGACGGAGTCGATCACGCAAGACGGCAAAGAC
ATCACCCTCACGGGCAGTGATTCACTGACCTTAAAAGTGGGTGACAGCAGCATTGTGATGAGTAGCGACAAGATTGAGAT
TTCCAGCAGCACCATCGCGTTAACCGCGGATTCTGCCATTTCCCTGTCGGGTGGCGACATCAGCCAATCGGGTGATTCGA
TCAGTCTCGATTCCGATGGTTCTTTGAGTGCGTCGTCGGGCAGTTCGATGTCTCTGAGTGCGGGCAGCAGCTTTACCGCG
TCGGCCAGCAGTTCGGCCACCGTGTCTGGCCTCAACGCGACACTGAGCGCAGATGTCACCGCGACAGTGTCGGGCAGTGC
GAAGGCGGAACTGAGTTCTGATGGTCAGGCGTCCATCAGCGGCGCATTGGTGATGGTGAACTAA