Detailed information of component protein


Summary

Component ID T6CP013353
Component protein type TssA
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (442 a.a.); Nucleotide sequence (1326 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 19486..20811 (-)
NCBI ID 1185549781
GenBank KY319184
Uniprot ID A0A1W6EUJ0_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 2e-24 6..151
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-441 MFEHLLNPISDEQPSGEYLKDNRTLYRTYRNAFNVAQSSFRQLVETPDAMQDAVVVHTNAENWDALAKLCESCLTEQSKDVEIYSWFTMAQLFSASPFESLAQALHTLEQMIESFWDSLQPTLPENKRRADSDAEQLKEVAEHRVKPLLQLIGDSAESGLLYMPLQMLPLVGDIDYGRFFAAEKSGSLPQLKAVALADFSREKAEVEARILALGASKDALLALEKTLQQKCAAAGTQSINFRFVKEAVERLINAIHFLVGDQFARWPLDAAMANAETPQTVPEQTMAAVHSASTESGHQPTQGQSQTAPVMAQTAAPVAVPVVSKEALASREQAFAELQRIADYFLATEPHSPIYLLLKRAIRWGGMSLPELLEELVGDNNAVQQRIEQLAGLESAQHQASRAAAPVASAPQITMPEAAPSVSPTSSTANGSESGLSAIEW


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9906 - -


  Protein sequence: 442 a.a.    

>T6CP013353 KY319184:c20811-19486 [Vibrio fluvialis] [TssA]
MFEHLLNPISDEQPSGEYLKDNRTLYRTYRNAFNVAQSSFRQLVETPDAMQDAVVVHTNAENWDALAKLCESCLTEQSKD
VEIYSWFTMAQLFSASPFESLAQALHTLEQMIESFWDSLQPTLPENKRRADSDAEQLKEVAEHRVKPLLQLIGDSAESGL
LYMPLQMLPLVGDIDYGRFFAAEKSGSLPQLKAVALADFSREKAEVEARILALGASKDALLALEKTLQQKCAAAGTQSIN
FRFVKEAVERLINAIHFLVGDQFARWPLDAAMANAETPQTVPEQTMAAVHSASTESGHQPTQGQSQTAPVMAQTAAPVAV
PVVSKEALASREQAFAELQRIADYFLATEPHSPIYLLLKRAIRWGGMSLPELLEELVGDNNAVQQRIEQLAGLESAQHQA
SRAAAPVASAPQITMPEAAPSVSPTSSTANGSESGLSAIEW*

  Nucleotide sequence: 1326 bp    

>T6CP013353 KY319184:c20811-19486 [Vibrio fluvialis] [TssA]
ATGTTTGAACATCTGCTCAACCCGATATCTGATGAACAACCGAGTGGCGAATATCTCAAGGATAATCGCACCTTGTATCG
CACGTATCGGAATGCATTCAACGTCGCACAATCCTCGTTCCGCCAACTGGTGGAAACACCGGATGCGATGCAGGACGCGG
TGGTGGTCCATACCAACGCGGAGAACTGGGATGCTCTGGCCAAACTGTGTGAAAGCTGTCTGACTGAGCAGTCCAAAGAT
GTCGAAATTTACTCCTGGTTCACCATGGCCCAGCTCTTCTCTGCTTCGCCTTTCGAGTCATTGGCGCAGGCGCTCCATAC
GCTGGAGCAGATGATCGAGAGTTTCTGGGACTCACTCCAGCCAACACTGCCGGAGAACAAACGCAGAGCAGACAGCGACG
CCGAACAACTCAAAGAAGTGGCGGAACACCGCGTGAAGCCGCTGCTGCAACTGATTGGCGATTCCGCAGAAAGTGGCTTG
CTGTACATGCCGCTGCAAATGCTGCCTCTGGTCGGCGACATTGATTATGGCCGTTTCTTTGCGGCAGAAAAATCGGGTTC
GTTGCCGCAGTTGAAAGCGGTCGCGCTGGCGGATTTTTCTCGTGAGAAGGCGGAAGTGGAAGCGCGCATTCTGGCACTCG
GTGCAAGTAAAGATGCTCTTCTTGCTCTGGAAAAGACCCTGCAGCAGAAATGTGCGGCGGCCGGTACCCAGTCGATTAAT
TTTCGCTTTGTGAAAGAGGCGGTCGAACGCCTGATCAATGCGATTCATTTTCTGGTGGGCGATCAATTTGCCCGTTGGCC
TCTGGACGCGGCGATGGCTAACGCTGAAACGCCACAAACGGTGCCTGAGCAAACCATGGCCGCCGTTCACTCTGCATCAA
CTGAATCTGGCCATCAGCCAACGCAGGGTCAGTCACAAACAGCGCCTGTCATGGCGCAAACTGCGGCGCCAGTGGCGGTA
CCTGTTGTGTCTAAGGAGGCGCTGGCGTCACGTGAACAGGCATTTGCCGAACTGCAACGCATTGCGGACTACTTTCTCGC
CACCGAACCCCACAGCCCGATATATCTGCTGCTGAAACGTGCGATTCGCTGGGGTGGCATGTCTCTTCCTGAACTGTTGG
AAGAGTTGGTGGGCGACAACAACGCAGTGCAGCAACGCATTGAACAATTGGCAGGTCTGGAAAGCGCGCAGCATCAGGCA
AGCCGTGCAGCGGCACCCGTTGCCTCAGCACCACAAATTACGATGCCGGAGGCTGCGCCTTCGGTATCCCCAACTTCATC
GACGGCAAACGGCAGCGAGAGCGGTCTGTCAGCGATTGAATGGTAG