SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP013352
Component protein type	TssD
T6SS ID (Type)	T6SS01029 (Type i5)
Strain	Vibrio fluvialis 85003
Replicon	chromosome
Sequence	Protein sequence (175 a.a.); Nucleotide sequence (525 bp)
Reference	[1] Huang Y, Du P, Zhao M, et al. Functional Characterization and Conditional Regulation of the Type VI Secretion System in Vibrio fluvialis. Front Microbiol. 2017 Mar 30;8:528. doi: 10.3389/fmicb.2017.00528. eCollection 2017. PMID: 28424671

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	18811..19335 (-)
NCBI ID	1185549780
GenBank	KY319184
Uniprot ID	A0A1W6EUK9_VIBFL
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_HCP	PF05638.14	6.7e-19	5..143

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-174	MASIYMRIDGLDNIKGAATIGDIGGKKGFFAIDTMNWGANRGVSVDVGNANNADKGMVSLDAVSVTRNSDGASPHLTTFLFAPGAEGKTVEILLTKPSRDGAGSEPYMVLTLEKARIASYNIHGSDGNLPVEDFAMTYTTLTKVYYQESAGGKIEKGDTVKFDCTTGKLESKAA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9869	-	-

Protein sequence: 175 a.a.

						>T6CP013352 KY319184:c19335-18811 [Vibrio fluvialis] [TssD]
MASIYMRIDGLDNIKGAATIGDIGGKKGFFAIDTMNWGANRGVSVDVGNANNADKGMVSLDAVSVTRNSDGASPHLTTFL
FAPGAEGKTVEILLTKPSRDGAGSEPYMVLTLEKARIASYNIHGSDGNLPVEDFAMTYTTLTKVYYQESAGGKIEKGDTV
KFDCTTGKLESKAA*					

Nucleotide sequence: 525 bp

						>T6CP013352 KY319184:c19335-18811 [Vibrio fluvialis] [TssD]
ATGGCATCTATCTACATGCGCATTGACGGACTGGACAATATCAAAGGTGCAGCGACGATCGGCGACATTGGCGGCAAGAA
AGGTTTCTTTGCTATCGACACCATGAACTGGGGTGCAAACCGCGGTGTGAGCGTGGATGTGGGTAACGCAAACAACGCAG
ACAAAGGCATGGTATCTCTGGATGCAGTGTCGGTCACTCGTAACTCTGACGGTGCTTCACCTCACCTGACGACGTTCCTG
TTTGCACCAGGTGCAGAAGGTAAAACAGTTGAAATTCTGCTGACCAAACCATCTCGTGATGGTGCTGGTTCTGAGCCATA
CATGGTTCTGACTCTGGAGAAGGCACGTATCGCGAGCTACAACATCCACGGTTCAGACGGCAACCTGCCAGTGGAAGACT
TTGCCATGACTTACACCACGCTGACTAAGGTTTACTACCAAGAAAGCGCAGGCGGCAAGATCGAGAAAGGCGACACTGTG
AAGTTTGACTGTACTACAGGCAAATTAGAGTCGAAAGCAGCTTAA					