Detailed information of component protein


Summary

Component ID T6CP013352
Component protein type TssD
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (175 a.a.); Nucleotide sequence (525 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 18811..19335 (-)
NCBI ID 1185549780
GenBank KY319184
Uniprot ID A0A1W6EUK9_VIBFL
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 6.7e-19 5..143

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-174 MASIYMRIDGLDNIKGAATIGDIGGKKGFFAIDTMNWGANRGVSVDVGNANNADKGMVSLDAVSVTRNSDGASPHLTTFLFAPGAEGKTVEILLTKPSRDGAGSEPYMVLTLEKARIASYNIHGSDGNLPVEDFAMTYTTLTKVYYQESAGGKIEKGDTVKFDCTTGKLESKAA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9869 - -



  Protein sequence: 175 a.a.    

>T6CP013352 KY319184:c19335-18811 [Vibrio fluvialis] [TssD]
MASIYMRIDGLDNIKGAATIGDIGGKKGFFAIDTMNWGANRGVSVDVGNANNADKGMVSLDAVSVTRNSDGASPHLTTFL
FAPGAEGKTVEILLTKPSRDGAGSEPYMVLTLEKARIASYNIHGSDGNLPVEDFAMTYTTLTKVYYQESAGGKIEKGDTV
KFDCTTGKLESKAA*

  Nucleotide sequence: 525 bp    

>T6CP013352 KY319184:c19335-18811 [Vibrio fluvialis] [TssD]
ATGGCATCTATCTACATGCGCATTGACGGACTGGACAATATCAAAGGTGCAGCGACGATCGGCGACATTGGCGGCAAGAA
AGGTTTCTTTGCTATCGACACCATGAACTGGGGTGCAAACCGCGGTGTGAGCGTGGATGTGGGTAACGCAAACAACGCAG
ACAAAGGCATGGTATCTCTGGATGCAGTGTCGGTCACTCGTAACTCTGACGGTGCTTCACCTCACCTGACGACGTTCCTG
TTTGCACCAGGTGCAGAAGGTAAAACAGTTGAAATTCTGCTGACCAAACCATCTCGTGATGGTGCTGGTTCTGAGCCATA
CATGGTTCTGACTCTGGAGAAGGCACGTATCGCGAGCTACAACATCCACGGTTCAGACGGCAACCTGCCAGTGGAAGACT
TTGCCATGACTTACACCACGCTGACTAAGGTTTACTACCAAGAAAGCGCAGGCGGCAAGATCGAGAAAGGCGACACTGTG
AAGTTTGACTGTACTACAGGCAAATTAGAGTCGAAAGCAGCTTAA