Detailed information of component protein


Summary

Component ID T6CP013350
Component protein type TssC
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (493 a.a.); Nucleotide sequence (1479 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 16806..18284 (-)
NCBI ID 1185549778
GenBank KY319184
Uniprot ID A0A1W6EUK2_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 2.6e-116 64..371
VipB_2 PF18945.2 3.7e-37 381..490
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-492 MSTELENQVSPEAGTESLSLLDRAIAATNQTPADQTKELFSVLAEQALSGTVTWDKNLTKTIENAIAEIDKQMSRQLSAIMQQDDFRRLEGSWRGLNKLVTESETGQSLKIKLVDFTKDELIEQFEDAPAVDRSPLFDALYQKEFGTAGGEPYGALIGDYTFSHKDEDVALMRYMGETAAASHAPFIAAANPEMFEFDSFETFNEGKPVASGFDSPAYASWNAFRESDDSRYVVLTLPQTLARLPYGDKGLGTKSFAYEELATDADGNPKPKNNAQLVWSNAAYELGLKMTQAHTQFGWCTAIRGLDNGGKVENLPNLTYKSEAGDLMQQCPIEVNLTDEREKELSDLGFLPLVHYKNTNYGVFIGSQTAQKPKTYTDPDATGNAAISARLPYIMASSRIAHYLKVMGRDMLGSNLEAADVQKDLQTWIDQYTNSGAVGNAERSKTPLCESRIQVVEQPGRPGAYSAVAHLRPWLQLEELTTSVRMVTKIPG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9889 - -


  Protein sequence: 493 a.a.    

>T6CP013350 KY319184:c18284-16806 [Vibrio fluvialis] [TssC]
MSTELENQVSPEAGTESLSLLDRAIAATNQTPADQTKELFSVLAEQALSGTVTWDKNLTKTIENAIAEIDKQMSRQLSAI
MQQDDFRRLEGSWRGLNKLVTESETGQSLKIKLVDFTKDELIEQFEDAPAVDRSPLFDALYQKEFGTAGGEPYGALIGDY
TFSHKDEDVALMRYMGETAAASHAPFIAAANPEMFEFDSFETFNEGKPVASGFDSPAYASWNAFRESDDSRYVVLTLPQT
LARLPYGDKGLGTKSFAYEELATDADGNPKPKNNAQLVWSNAAYELGLKMTQAHTQFGWCTAIRGLDNGGKVENLPNLTY
KSEAGDLMQQCPIEVNLTDEREKELSDLGFLPLVHYKNTNYGVFIGSQTAQKPKTYTDPDATGNAAISARLPYIMASSRI
AHYLKVMGRDMLGSNLEAADVQKDLQTWIDQYTNSGAVGNAERSKTPLCESRIQVVEQPGRPGAYSAVAHLRPWLQLEEL
TTSVRMVTKIPG*

  Nucleotide sequence: 1479 bp    

>T6CP013350 KY319184:c18284-16806 [Vibrio fluvialis] [TssC]
ATGAGTACTGAGTTAGAGAATCAGGTTAGCCCTGAAGCTGGTACCGAGTCACTCAGCCTGCTGGATCGCGCGATTGCCGC
GACCAACCAGACTCCGGCTGATCAAACCAAGGAACTGTTTTCCGTTCTGGCTGAACAAGCGCTGAGCGGCACCGTCACTT
GGGACAAAAACCTGACGAAAACCATCGAAAATGCGATCGCGGAAATCGACAAGCAGATGTCTCGTCAGCTGTCTGCAATC
ATGCAGCAGGATGATTTCCGTCGTCTGGAAGGTTCATGGCGTGGTCTGAACAAGCTCGTCACTGAAAGTGAAACGGGTCA
GTCTCTCAAGATCAAGCTGGTGGACTTCACTAAAGATGAACTGATTGAGCAATTTGAAGACGCACCTGCGGTTGACCGCA
GCCCGCTGTTTGATGCGCTGTATCAGAAAGAATTCGGCACGGCGGGTGGTGAACCTTACGGTGCGCTGATTGGCGACTAC
ACCTTCTCACACAAAGATGAAGATGTGGCGCTGATGCGTTACATGGGCGAAACCGCAGCGGCAAGCCACGCGCCATTTAT
CGCGGCGGCGAACCCGGAAATGTTTGAGTTTGACTCGTTTGAAACCTTCAACGAGGGTAAACCCGTTGCGTCTGGTTTTG
ACTCGCCAGCCTACGCATCATGGAATGCCTTCCGCGAAAGCGATGATTCACGCTACGTGGTGCTGACACTGCCTCAGACT
CTGGCACGTCTGCCATACGGCGACAAAGGTCTGGGCACCAAATCGTTCGCATACGAAGAACTGGCAACTGACGCGGATGG
CAATCCGAAGCCAAAAAACAATGCGCAACTGGTGTGGTCAAACGCAGCTTACGAACTGGGCCTGAAAATGACTCAGGCGC
ACACTCAGTTCGGCTGGTGTACGGCAATTCGTGGTCTGGACAACGGCGGTAAAGTCGAGAACCTGCCAAACCTGACTTAC
AAGTCAGAAGCAGGCGATTTGATGCAGCAGTGTCCGATTGAAGTCAACCTGACCGACGAGCGTGAAAAAGAGTTGAGCGA
TCTGGGCTTCCTGCCTCTGGTGCATTACAAGAACACCAACTACGGCGTGTTTATTGGCAGTCAAACTGCGCAGAAGCCAA
AAACGTACACCGACCCTGATGCAACGGGTAACGCGGCAATTTCTGCCCGTCTGCCTTACATCATGGCCAGTAGCCGTATC
GCACATTACCTGAAAGTGATGGGCCGCGACATGCTGGGTTCAAACCTGGAAGCGGCGGACGTGCAGAAAGATCTGCAAAC
CTGGATCGATCAGTACACCAACTCAGGTGCGGTGGGCAATGCAGAACGTTCTAAAACGCCTCTGTGTGAATCTCGCATTC
AAGTGGTGGAGCAACCGGGTCGTCCGGGCGCTTATTCAGCAGTGGCGCATCTGCGTCCATGGCTACAACTGGAAGAGCTA
ACCACGTCTGTACGTATGGTTACTAAGATTCCAGGCTAA