Detailed information of component protein


Summary

Component ID T6CP013349
Component protein type TssC
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (475 a.a.); Nucleotide sequence (1425 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 15353..16777 (-)
NCBI ID 1185549777
GenBank KY319184
Uniprot ID A0A1W6EUK0_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 1.1e-74 48..346
VipB_2 PF18945.2 5.1e-33 354..461
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-474 MFDADFQHAFCQLNPEAEDFLPQALAQLLKLDPQMLSNREVLLASLLRLIAEIDDRMSRQLSVVIHHPDFSRLEASWKGVEALVSLPVNYQKVQIKIRNMSWEDLSQELNTAVSLRRTSLYNLIGNRELNTSGGQPFGMVVVDHALSMSLDGDYDDLYTLELLSQLGDLCLCPFILSPSDDFFGESGADWFSDIERVKKILHGPEFVAWQRVRRLSSTRFIGLVVPKIRLREAYGRSASSAIQFREYNANPAGLWGSAAYLFASVAIREFNRINWFGFMKSRWQDKYYGSLGNVPPGGAGVSATLRPTPDIRLITEMGTFYADEGFIPLCHSLTTDKYFFRGNNSIWSEAKDDTESVMGQIQTTLMICRIAHYLKVQIRSMIGNFQTAEECETYLNRWLDKYSSNLFNADEATLAKYPLSKGRVEVREIDGQHGRYTCDVFVQPQYQFDNVCGEVLLSTDLGPEREPRFAGGLV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9974 - -


  Protein sequence: 475 a.a.    

>T6CP013349 KY319184:c16777-15353 [Vibrio fluvialis] [TssC]
MFDADFQHAFCQLNPEAEDFLPQALAQLLKLDPQMLSNREVLLASLLRLIAEIDDRMSRQLSVVIHHPDFSRLEASWKGV
EALVSLPVNYQKVQIKIRNMSWEDLSQELNTAVSLRRTSLYNLIGNRELNTSGGQPFGMVVVDHALSMSLDGDYDDLYTL
ELLSQLGDLCLCPFILSPSDDFFGESGADWFSDIERVKKILHGPEFVAWQRVRRLSSTRFIGLVVPKIRLREAYGRSASS
AIQFREYNANPAGLWGSAAYLFASVAIREFNRINWFGFMKSRWQDKYYGSLGNVPPGGAGVSATLRPTPDIRLITEMGTF
YADEGFIPLCHSLTTDKYFFRGNNSIWSEAKDDTESVMGQIQTTLMICRIAHYLKVQIRSMIGNFQTAEECETYLNRWLD
KYSSNLFNADEATLAKYPLSKGRVEVREIDGQHGRYTCDVFVQPQYQFDNVCGEVLLSTDLGPEREPRFAGGLV*

  Nucleotide sequence: 1425 bp    

>T6CP013349 KY319184:c16777-15353 [Vibrio fluvialis] [TssC]
ATGTTTGATGCTGATTTTCAACACGCGTTTTGCCAGCTAAACCCTGAGGCGGAAGATTTTCTGCCTCAGGCGTTGGCGCA
ACTGTTGAAACTCGACCCACAGATGTTGAGTAATCGTGAGGTGCTGTTGGCATCATTGCTGCGTTTGATTGCAGAGATTG
ATGACCGCATGTCGCGTCAGCTGTCAGTCGTCATTCATCATCCTGATTTTTCTCGCCTCGAAGCTTCCTGGAAAGGGGTC
GAGGCCTTAGTGTCTCTGCCGGTGAACTACCAGAAAGTGCAGATTAAAATCAGAAATATGTCCTGGGAGGATCTCTCCCA
GGAACTCAACACCGCTGTTTCGTTGCGACGCACATCCCTCTATAACCTGATTGGTAACCGCGAGCTCAATACCTCCGGTG
GTCAGCCATTTGGTATGGTGGTGGTGGATCATGCGTTATCGATGAGTCTTGATGGTGACTACGATGACCTCTACACCTTA
GAGCTGTTGTCTCAACTGGGTGATCTTTGTCTTTGTCCGTTTATTCTCTCTCCGTCGGATGACTTTTTTGGCGAATCAGG
TGCCGACTGGTTTTCAGACATTGAACGGGTAAAGAAAATATTACACGGTCCGGAATTTGTGGCCTGGCAACGGGTGAGAC
GTTTGTCTTCCACCCGTTTTATTGGTTTGGTGGTGCCGAAGATTCGCCTGCGCGAAGCGTATGGCCGCAGCGCCAGCAGC
GCCATTCAATTTCGGGAATATAACGCGAATCCGGCAGGTTTGTGGGGCAGCGCGGCGTATCTGTTTGCCTCGGTTGCGAT
TCGTGAATTCAATCGCATCAACTGGTTTGGCTTTATGAAGTCGCGCTGGCAGGACAAATACTACGGCTCGCTTGGCAATG
TGCCGCCGGGCGGCGCAGGCGTCAGTGCCACACTCAGACCCACACCCGATATCCGTTTGATCACCGAGATGGGCACGTTT
TACGCCGACGAAGGCTTCATTCCGCTCTGTCACAGCCTGACCACGGACAAATATTTCTTTCGCGGCAACAACTCCATCTG
GAGTGAAGCGAAAGACGATACCGAGTCGGTGATGGGCCAGATCCAAACCACGCTCATGATCTGTCGCATCGCGCATTATC
TCAAAGTGCAGATCCGCAGCATGATCGGTAACTTCCAAACCGCAGAAGAGTGTGAAACCTACCTCAACCGTTGGTTGGAC
AAGTATTCCAGCAACCTGTTTAACGCCGATGAAGCGACGCTGGCCAAGTATCCACTCAGTAAAGGCCGGGTTGAGGTGCG
TGAAATCGATGGTCAACATGGTCGCTATACCTGTGACGTGTTCGTTCAGCCGCAGTACCAGTTCGACAACGTGTGCGGCG
AAGTGCTGCTGTCGACGGATCTCGGCCCGGAAAGAGAGCCAAGATTTGCCGGAGGTCTGGTATGA