Detailed information of component protein


Summary

Component ID T6CP013348
Component protein type TssF
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (592 a.a.); Nucleotide sequence (1776 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 13166..14941 (-)
NCBI ID 1185549775
GenBank KY319184
Uniprot ID A0A1W6EUK8_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 9.2e-128 1..588
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-591 MSDQLLSYFERELTYIRRALDGFGKDFPEHASSMRLNQSSQEDPNISRLIDAVALLTAKTEKRMDEQFPEILQDLFHVLYPGYLQIVPSYAPLSLNLEDNAVTEAVVLPQGSEVAVEVNDAECRFTLAQALTIEPYVIAVLRAESAPFNFPTPAGLRRAEAVIQVELACSDPSVLFSQLSLQHFDFYVRGFENSARGLVDMLLLNTEVLSVFDASGQQRVVDATRLKSRVADPDFHWLPQYGNHLGGFDLLRDYFAYPDKAAYLRIADLGKELMSFDANRVTLNFFVRQLPAEYLRLFSRDVLALNTAPAINLYAQYGDPIRYDFTRLSMPVVADTRANNELTVVSVDEVNEVLPTGEVPLSPNYEGGYWLDDESPRWQIHQFWDERGRRQMDISVSYTELQPAQESVVLSLRLHVCNGRLPCLIPANAVMESLAAIDLPGDLKLLKTPTAPQYPPLDNQLSWRFVAMLNANFSGLIQNEDPTRMLQDVLRLCSNSAQCAVADAIKKVAYNHVVAPLTINGRSIFASGTEVMILIDDELLDSNFAVVSEVLNAYFRQYCSFDRFVQVSVERFGSDEAGIHFEKTHGSQLCL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9895 - -


  Protein sequence: 592 a.a.    

>T6CP013348 KY319184:c14941-13166 [Vibrio fluvialis] [TssF]
MSDQLLSYFERELTYIRRALDGFGKDFPEHASSMRLNQSSQEDPNISRLIDAVALLTAKTEKRMDEQFPEILQDLFHVLY
PGYLQIVPSYAPLSLNLEDNAVTEAVVLPQGSEVAVEVNDAECRFTLAQALTIEPYVIAVLRAESAPFNFPTPAGLRRAE
AVIQVELACSDPSVLFSQLSLQHFDFYVRGFENSARGLVDMLLLNTEVLSVFDASGQQRVVDATRLKSRVADPDFHWLPQ
YGNHLGGFDLLRDYFAYPDKAAYLRIADLGKELMSFDANRVTLNFFVRQLPAEYLRLFSRDVLALNTAPAINLYAQYGDP
IRYDFTRLSMPVVADTRANNELTVVSVDEVNEVLPTGEVPLSPNYEGGYWLDDESPRWQIHQFWDERGRRQMDISVSYTE
LQPAQESVVLSLRLHVCNGRLPCLIPANAVMESLAAIDLPGDLKLLKTPTAPQYPPLDNQLSWRFVAMLNANFSGLIQNE
DPTRMLQDVLRLCSNSAQCAVADAIKKVAYNHVVAPLTINGRSIFASGTEVMILIDDELLDSNFAVVSEVLNAYFRQYCS
FDRFVQVSVERFGSDEAGIHFEKTHGSQLCL*

  Nucleotide sequence: 1776 bp    

>T6CP013348 KY319184:c14941-13166 [Vibrio fluvialis] [TssF]
TTGTCTGATCAATTATTGAGTTATTTCGAGCGCGAGCTCACCTACATTCGTCGTGCGCTGGATGGGTTTGGCAAAGACTT
TCCCGAACACGCTTCGTCGATGCGTTTGAATCAGAGCAGTCAGGAAGACCCGAATATCAGTCGCCTGATTGATGCGGTGG
CGCTGCTGACCGCGAAAACTGAAAAACGCATGGATGAGCAGTTCCCCGAGATCCTGCAGGATCTGTTTCACGTCCTGTAT
CCCGGCTATCTGCAAATTGTGCCGAGTTATGCGCCGCTGTCGCTCAACCTTGAAGACAACGCAGTGACCGAAGCGGTGGT
GTTGCCGCAAGGCTCGGAAGTGGCGGTGGAAGTGAATGACGCCGAGTGCCGCTTTACGCTGGCGCAGGCATTGACGATTG
AGCCGTATGTGATTGCGGTGTTGCGTGCCGAGTCGGCGCCGTTTAATTTTCCGACGCCAGCCGGACTGCGCCGCGCAGAA
GCGGTGATTCAGGTTGAACTGGCGTGCAGCGATCCTTCCGTTTTGTTTTCGCAGTTATCGCTGCAACATTTTGATTTCTA
TGTGCGCGGGTTTGAAAACAGCGCCCGTGGTCTGGTTGACATGCTGCTGCTCAATACCGAAGTGTTGTCGGTATTTGATG
CGTCGGGTCAGCAACGTGTCGTCGACGCGACGCGGTTGAAATCGCGCGTGGCCGATCCCGATTTTCACTGGCTGCCGCAA
TATGGTAACCACTTGGGTGGCTTCGACCTGCTGCGTGACTACTTTGCTTACCCGGACAAAGCGGCCTACTTGCGGATTGC
TGACCTTGGCAAGGAACTGATGAGTTTTGACGCCAATCGCGTCACGCTCAACTTCTTTGTGCGTCAACTGCCGGCGGAAT
ATCTGCGCTTATTCAGTCGTGACGTGTTGGCGCTCAATACCGCGCCGGCGATTAATCTCTACGCTCAGTATGGCGATCCG
ATTCGCTACGACTTCACGCGCCTGTCGATGCCGGTTGTCGCGGACACGCGTGCCAACAACGAACTGACGGTGGTCAGTGT
GGACGAAGTCAACGAAGTGCTGCCGACGGGCGAAGTGCCGCTGAGTCCGAACTACGAAGGCGGATACTGGCTTGATGATG
AGTCACCGCGTTGGCAGATTCATCAATTCTGGGACGAGCGTGGCCGCCGTCAGATGGACATTTCCGTCAGTTATACCGAG
CTGCAACCGGCTCAGGAGTCGGTGGTGCTGTCGCTGCGTCTGCACGTGTGTAACGGCCGTTTACCGTGCCTCATCCCGGC
GAATGCGGTGATGGAATCGCTGGCTGCGATTGATCTACCGGGCGATCTCAAACTGCTGAAAACGCCGACCGCGCCGCAGT
ATCCGCCACTGGACAATCAGCTGAGCTGGCGCTTTGTGGCCATGCTCAACGCGAACTTTTCCGGGCTGATTCAGAACGAA
GATCCGACCCGAATGCTGCAGGACGTGCTGCGTTTGTGCAGTAACAGCGCGCAGTGCGCCGTCGCGGATGCGATTAAAAA
AGTGGCCTATAACCACGTGGTGGCACCATTGACGATCAATGGCCGCAGCATTTTTGCGTCCGGCACCGAGGTGATGATCC
TGATCGATGATGAACTGCTTGACAGCAACTTTGCCGTGGTCAGCGAAGTGCTGAATGCCTATTTCCGCCAATATTGCAGT
TTTGACCGTTTCGTCCAGGTCAGTGTGGAGCGGTTTGGTAGTGACGAGGCTGGTATTCATTTTGAAAAAACGCACGGGAG
TCAGCTATGTCTCTGA