Detailed information of component protein


Summary

Component ID T6CP013347
Component protein type TssG
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (342 a.a.); Nucleotide sequence (1026 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 12150..13175 (-)
NCBI ID 1185549774
GenBank KY319184
Uniprot ID A0A1W6EUI8_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 7.9e-51 17..311
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-341 MSLSSRQTVKQHLLTHPHEFDFVQVIRLLQAISQQESLSVRLQSDPMPHGAPTEVTRIEKDHDEVRVQLGLEALSGCKGVIPDYLYAEMLHSLHQDDRALQRFLDVFNQRYYELKAYVESAANLMLREEREAASRYALSRLTQKQALACMFSLPMQRGQKVDQSVLRYGLALASRNRNLAQLKRLLCDYFDLDITPKVVPSAVYRIRNQDQTRIGGHSGQNHRLGRGMVMGRQGNQAYQTLEIWITPRNRNEFIGLERNRHFARSLKSLVQSYLRESLETRLYLYVKREYINAPVISAVAGGVRLGEASCLSPQRRAADYRKILLQSENVYVTGKTGQPGQ


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9779 - -


  Protein sequence: 342 a.a.    

>T6CP013347 KY319184:c13175-12150 [Vibrio fluvialis] [TssG]
MSLSSRQTVKQHLLTHPHEFDFVQVIRLLQAISQQESLSVRLQSDPMPHGAPTEVTRIEKDHDEVRVQLGLEALSGCKGV
IPDYLYAEMLHSLHQDDRALQRFLDVFNQRYYELKAYVESAANLMLREEREAASRYALSRLTQKQALACMFSLPMQRGQK
VDQSVLRYGLALASRNRNLAQLKRLLCDYFDLDITPKVVPSAVYRIRNQDQTRIGGHSGQNHRLGRGMVMGRQGNQAYQT
LEIWITPRNRNEFIGLERNRHFARSLKSLVQSYLRESLETRLYLYVKREYINAPVISAVAGGVRLGEASCLSPQRRAADY
RKILLQSENVYVTGKTGQPGQ*

  Nucleotide sequence: 1026 bp    

>T6CP013347 KY319184:c13175-12150 [Vibrio fluvialis] [TssG]
ATGTCTCTGAGCTCGCGCCAGACGGTCAAACAGCATTTGCTGACTCACCCGCATGAATTTGATTTCGTGCAGGTGATTCG
TCTGTTGCAGGCCATCAGCCAACAAGAGTCGCTGTCGGTGCGTTTGCAATCGGATCCGATGCCGCATGGCGCGCCGACTG
AAGTCACGCGTATCGAAAAAGATCATGACGAAGTGCGTGTTCAGCTCGGCTTGGAAGCGTTGTCCGGCTGCAAAGGGGTC
ATTCCCGATTATCTCTATGCAGAGATGCTGCATAGCCTGCATCAGGATGATCGCGCGTTACAACGTTTTCTGGATGTGTT
TAACCAGCGTTATTACGAACTCAAAGCCTATGTGGAAAGCGCGGCGAACCTGATGTTGAGAGAGGAGCGCGAAGCGGCGT
CTCGTTATGCGCTGTCACGCCTGACTCAGAAGCAGGCGCTGGCCTGTATGTTCTCGCTGCCTATGCAGCGCGGCCAGAAA
GTCGATCAAAGTGTGCTGCGCTATGGTCTGGCTCTCGCGTCCCGCAACCGCAATCTGGCGCAACTCAAGCGCCTTCTGTG
TGACTATTTCGACCTCGATATCACCCCCAAAGTGGTGCCTTCGGCGGTTTATCGCATTCGCAATCAGGACCAAACCCGTA
TCGGCGGTCACAGTGGTCAGAACCACCGTCTTGGCCGTGGCATGGTCATGGGCCGTCAGGGCAATCAGGCCTACCAAACG
CTGGAAATCTGGATCACGCCGCGCAACCGCAATGAATTTATTGGCTTAGAGCGCAATCGTCATTTTGCCCGTTCACTGAA
ATCTCTGGTGCAGTCTTACCTGCGTGAAAGTCTGGAAACACGCCTGTACCTGTATGTGAAACGTGAATACATCAACGCCC
CGGTGATATCGGCCGTGGCTGGAGGCGTTCGCCTAGGCGAAGCCAGCTGTCTTTCCCCGCAGCGTCGCGCTGCGGATTAT
CGGAAAATATTATTACAATCGGAGAACGTCTATGTCACAGGTAAAACTGGGCAACCTGGTCAGTAA