Detailed information of component protein


Summary

Component ID T6CP013346
Component protein type TssH
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (873 a.a.); Nucleotide sequence (2619 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 9566..12184 (-)
NCBI ID 1185549773
GenBank KY319184
Uniprot ID A0A1W6EUJ6_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 6.1e-41 601..768
AAA_lid_9 PF17871.3 2.2e-29 358..450
ClpB_D2-small PF10431.11 5.7e-11 774..847
AAA PF00004.31 4.7e-10 219..350
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-872 MSQVKLGNLVSKLAPELKASLEEAAGAAMTQTVAAIEIEHWLVQLLLSKETHLMAFINKQHIDANRLMAELTARIERLTKGSASQPAISSALSSLLEEAWLQASVNFSQGQVSSLHLLLVLTQTDSFGVKKLALESLNNVSQEALSAQIAQLQTVQAGSSSAPAASGHSGPVAGGALDKYTVNLTQQAREGKIDPISGRNSEVRLAIDILCRKRQNNPILVGEPGVGKTAVVEGLALRVVSGEVPPAIQGVEIHTLDLGLLQAGASIKGEFENRLKDVINEVKNSPTPIIVFIDEAHTLIGAGGAAGQNDAANLLKPALARGEFRSMAATTWAEYKKYFEKDPALTRRFQVVKVEEPSAEDALQMLRGVAQSLRRHHGVFIREDALDAAVQLSIRYLPSRQLPDKAISLLDTACARIALTQGAKPEQIESLEQQLRYLNSELEALENEDTVLVGSAVDRQSIKDTVVRKQAELLTLTERWEQEKALVAEIKQLTGEIETRFHAGEAADPQTQQVLQGKLDELVQLQDEEPMVFPMVDAQVIAEVISGWTGIPSGNMVKEEVASLLSLEDSLHRRVIGQKTAINELAKSIRISRAGLTDSRKPVGVFLMCGPSGVGKTETAMALADEVFGGENNMTVINMTEFKEEHKISMLLGSPAGYVGFGEGGVLTEAIRRNPYTVLLLDEMEKAHPGVHDLFYQIFDKGHIKDSEGRTVDFKNTIIIMTSNAADQAICDVCDDNEQRPENDDLLEQIRPALLRHFKPAFLGRTTIVPYYPLNQDELSQITAISLNRIAKKLHEQYKAEFIWDQAFVDFVVGRNTDPTTGGRAVEQIINRSLMPRLAEECIQRLSEGLPIQKVSVSADLNQGGALLLDIV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9958 - -


  Protein sequence: 873 a.a.    

>T6CP013346 KY319184:c12184-9566 [Vibrio fluvialis] [TssH]
MSQVKLGNLVSKLAPELKASLEEAAGAAMTQTVAAIEIEHWLVQLLLSKETHLMAFINKQHIDANRLMAELTARIERLTK
GSASQPAISSALSSLLEEAWLQASVNFSQGQVSSLHLLLVLTQTDSFGVKKLALESLNNVSQEALSAQIAQLQTVQAGSS
SAPAASGHSGPVAGGALDKYTVNLTQQAREGKIDPISGRNSEVRLAIDILCRKRQNNPILVGEPGVGKTAVVEGLALRVV
SGEVPPAIQGVEIHTLDLGLLQAGASIKGEFENRLKDVINEVKNSPTPIIVFIDEAHTLIGAGGAAGQNDAANLLKPALA
RGEFRSMAATTWAEYKKYFEKDPALTRRFQVVKVEEPSAEDALQMLRGVAQSLRRHHGVFIREDALDAAVQLSIRYLPSR
QLPDKAISLLDTACARIALTQGAKPEQIESLEQQLRYLNSELEALENEDTVLVGSAVDRQSIKDTVVRKQAELLTLTERW
EQEKALVAEIKQLTGEIETRFHAGEAADPQTQQVLQGKLDELVQLQDEEPMVFPMVDAQVIAEVISGWTGIPSGNMVKEE
VASLLSLEDSLHRRVIGQKTAINELAKSIRISRAGLTDSRKPVGVFLMCGPSGVGKTETAMALADEVFGGENNMTVINMT
EFKEEHKISMLLGSPAGYVGFGEGGVLTEAIRRNPYTVLLLDEMEKAHPGVHDLFYQIFDKGHIKDSEGRTVDFKNTIII
MTSNAADQAICDVCDDNEQRPENDDLLEQIRPALLRHFKPAFLGRTTIVPYYPLNQDELSQITAISLNRIAKKLHEQYKA
EFIWDQAFVDFVVGRNTDPTTGGRAVEQIINRSLMPRLAEECIQRLSEGLPIQKVSVSADLNQGGALLLDIV*

  Nucleotide sequence: 2619 bp    

>T6CP013346 KY319184:c12184-9566 [Vibrio fluvialis] [TssH]
ATGTCACAGGTAAAACTGGGCAACCTGGTCAGTAAACTGGCCCCGGAGCTGAAAGCATCACTGGAAGAAGCAGCCGGTGC
TGCGATGACACAAACGGTGGCCGCCATTGAAATTGAACACTGGTTGGTGCAACTGCTGTTGTCCAAAGAAACGCATCTGA
TGGCGTTCATCAATAAACAGCACATCGATGCGAACCGCCTGATGGCCGAACTGACTGCACGTATTGAACGCCTGACGAAA
GGCTCTGCCAGCCAACCTGCGATCAGCAGTGCATTGAGCTCGCTGCTGGAAGAAGCCTGGCTGCAGGCGTCGGTTAATTT
CTCTCAGGGGCAGGTCAGCAGCCTGCATCTGCTGTTGGTACTGACTCAAACCGACAGTTTTGGTGTGAAGAAACTGGCGC
TGGAGAGTTTGAACAATGTGTCTCAGGAAGCGTTGTCTGCTCAGATTGCGCAGTTGCAAACCGTTCAGGCGGGTTCTTCT
TCTGCGCCTGCTGCCAGCGGCCACAGTGGCCCGGTCGCGGGTGGCGCGCTGGATAAATACACCGTCAACCTGACGCAACA
GGCGCGTGAGGGCAAAATTGATCCGATTTCGGGTCGTAACAGCGAAGTGCGTCTGGCGATTGATATCTTGTGTCGTAAAC
GTCAGAACAACCCGATTTTGGTCGGTGAACCGGGGGTGGGTAAAACCGCGGTGGTTGAAGGTTTGGCGCTGCGCGTCGTC
AGCGGTGAAGTCCCGCCAGCGATTCAGGGCGTGGAAATTCATACGCTGGACCTGGGTCTGTTGCAGGCGGGTGCGAGCAT
CAAGGGCGAGTTTGAAAACCGCCTGAAAGATGTCATCAACGAAGTGAAAAACTCACCGACGCCAATCATTGTCTTTATCG
ATGAAGCACACACGCTGATTGGGGCGGGTGGCGCAGCGGGTCAGAATGATGCAGCGAACCTGCTGAAACCTGCGCTGGCT
CGTGGCGAGTTCCGTTCCATGGCCGCGACAACCTGGGCGGAATACAAGAAGTACTTTGAAAAAGATCCCGCATTGACCCG
TCGTTTTCAGGTCGTCAAAGTGGAAGAACCAAGTGCGGAAGATGCGCTGCAAATGCTGCGCGGCGTGGCACAGTCGCTAC
GTCGTCACCACGGTGTGTTTATTCGTGAGGACGCGCTGGATGCGGCGGTACAACTCTCTATCCGTTATCTGCCCTCTCGT
CAGTTACCCGACAAAGCCATCAGTCTGCTGGATACGGCCTGTGCGCGCATTGCGCTGACGCAGGGCGCCAAACCGGAGCA
GATCGAATCGCTTGAGCAGCAACTGCGCTACCTCAACAGCGAACTTGAAGCGCTGGAGAATGAAGACACAGTGCTGGTGG
GCAGCGCGGTTGATCGCCAGTCGATCAAAGATACCGTGGTGCGCAAGCAAGCAGAACTTCTCACGCTGACGGAACGTTGG
GAACAGGAAAAAGCGCTGGTAGCGGAGATCAAACAGCTGACCGGTGAGATTGAGACCCGCTTCCATGCTGGCGAAGCGGC
GGACCCACAAACTCAGCAAGTATTGCAAGGCAAGCTGGACGAGCTGGTTCAACTGCAAGATGAAGAGCCCATGGTGTTCC
CAATGGTCGATGCGCAGGTGATTGCGGAAGTGATCTCTGGCTGGACGGGCATTCCAAGCGGCAACATGGTCAAAGAAGAA
GTGGCGTCACTGCTGTCGCTGGAAGACTCGCTCCACCGCCGCGTGATTGGCCAGAAAACTGCGATCAACGAGCTGGCGAA
AAGTATCCGTATTTCACGAGCTGGCTTAACCGACAGCCGTAAACCTGTCGGCGTGTTTCTGATGTGTGGCCCGAGTGGTG
TCGGCAAAACCGAAACGGCGATGGCGCTGGCAGATGAAGTCTTCGGCGGCGAAAACAACATGACCGTGATTAACATGACG
GAGTTTAAAGAAGAGCACAAAATTTCCATGCTGCTGGGTTCACCGGCCGGTTATGTCGGTTTTGGTGAAGGCGGCGTGCT
GACCGAAGCGATTCGCCGCAACCCATATACCGTGCTGCTGCTGGACGAGATGGAAAAAGCGCATCCGGGTGTGCATGACC
TGTTCTACCAAATCTTTGATAAAGGCCATATTAAAGACAGTGAAGGCCGCACGGTCGATTTCAAAAATACCATCATCATC
ATGACGTCCAACGCGGCCGATCAGGCGATTTGCGATGTGTGTGATGACAACGAACAACGTCCGGAAAATGACGATCTGCT
GGAGCAAATCCGTCCAGCGCTGCTGCGTCACTTTAAGCCTGCGTTCCTCGGCCGTACTACGATTGTGCCTTATTACCCGC
TCAATCAGGACGAGCTAAGCCAGATCACCGCGATCAGCCTTAACCGCATTGCGAAAAAACTGCACGAGCAGTACAAGGCC
GAGTTTATCTGGGATCAGGCCTTCGTTGATTTTGTCGTGGGACGCAACACTGACCCAACCACGGGTGGTCGCGCGGTGGA
GCAAATCATCAACCGCTCTCTGATGCCACGTTTGGCGGAAGAGTGCATTCAGCGCCTGAGTGAAGGGCTGCCGATCCAGA
AAGTTTCGGTCAGTGCGGATCTCAATCAAGGCGGTGCCCTGCTGCTGGATATCGTATGA