Detailed information of component protein


Summary

Component ID T6CP013345
Component protein type TssJ
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (172 a.a.); Nucleotide sequence (516 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 7325..7840 (-)
NCBI ID 1185549770
GenBank KY319184
Uniprot ID A0A1W6EUJ1_VIBFL
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS-SciN PF12790.9 3.7e-28 37..154

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-171 MSWLNRIRLAAISCCALVLSACSSSSSTTTFAPTLKVPLVVEASKDINVFDDEQARPVVVRVYQLQDAGNFQKADFISLYNADQSVLADSLVDLQTLAPVLPGELRNLTLDVQQQSRFIAVLVEFAHYETATAKAYMALVSDPEEYPVYIHITKQKVELTQPVSKSWWNVF



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
LIPO(Sec/SPII) 0.9986 pos: 21-22. LSA-CS. MSWLNRIRLAAISCCALVLSA



  Protein sequence: 172 a.a.    

>T6CP013345 KY319184:c7840-7325 [Vibrio fluvialis] [TssJ]
MSWLNRIRLAAISCCALVLSACSSSSSTTTFAPTLKVPLVVEASKDINVFDDEQARPVVVRVYQLQDAGNFQKADFISLY
NADQSVLADSLVDLQTLAPVLPGELRNLTLDVQQQSRFIAVLVEFAHYETATAKAYMALVSDPEEYPVYIHITKQKVELT
QPVSKSWWNVF*

  Nucleotide sequence: 516 bp    

>T6CP013345 KY319184:c7840-7325 [Vibrio fluvialis] [TssJ]
ATGAGCTGGCTGAATAGGATTCGCCTTGCGGCAATCAGCTGCTGCGCGTTGGTGCTGAGTGCTTGTAGTTCAAGCAGTTC
AACCACCACGTTTGCCCCCACACTCAAAGTGCCGCTGGTGGTCGAAGCGAGTAAAGACATCAATGTGTTTGATGATGAAC
AAGCGCGACCGGTGGTCGTACGCGTGTATCAGCTGCAGGATGCCGGCAATTTCCAGAAAGCCGATTTCATCAGCCTGTAC
AACGCGGATCAGAGCGTGCTGGCCGATTCGCTGGTGGATTTGCAGACACTCGCGCCTGTCCTGCCGGGAGAGCTGCGCAA
CCTGACCTTGGATGTCCAGCAACAAAGCCGCTTTATCGCCGTATTGGTCGAATTTGCACATTACGAAACCGCGACCGCCA
AAGCGTATATGGCGCTGGTGAGCGATCCCGAAGAGTACCCAGTTTATATCCACATCACCAAGCAGAAGGTTGAGCTGACT
CAACCGGTCAGCAAGTCGTGGTGGAACGTGTTTTAA