Detailed information of component protein


Summary

Component ID T6CP013344
Component protein type TssK
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (430 a.a.); Nucleotide sequence (1290 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 5989..7278 (-)
NCBI ID 1185549769
GenBank KY319184
Uniprot ID A0A1W6EUJ7_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 2.2e-100 7..428
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-429 MFIAPQHFQQQDRHTHQYIQKYVALSSQGSGFGVSALELDHHYLKIGKFGVVHCQGIFPEGTLFDCVKELLLDIPEGTLNQRVYLVLPLSVEGENEYGSRADKRRYVVSQVNLFDASDVVQSAIEAELAEPNIRLVLEGEDVTGLALLPVAKVLERQENGEVILDRSFIPACLHYGASQLLKERLKEIFILTQARANSVVQRIGAGQQTKSDLSLMREFLWLQTLNRWLPWLHLTLEQPQTSVDALYEGLVSFSAELDSFKPAMTAMPEPLVRDDLKQGFAGVFAQLREKLSMVQSDNVTEFSWDTNLFERRRLLRLSIPNLNQIEGRRFVMAVHASIGTAALLQVFPSACTLSGLSQIADLVRNSQSGVPIQVLPVAPNELKAQADVAYFEIDTAHEYWQQLKIKREPIALHVDSRVPDLSIKLYALG


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9501 - -


  Protein sequence: 430 a.a.    

>T6CP013344 KY319184:c7278-5989 [Vibrio fluvialis] [TssK]
MFIAPQHFQQQDRHTHQYIQKYVALSSQGSGFGVSALELDHHYLKIGKFGVVHCQGIFPEGTLFDCVKELLLDIPEGTLN
QRVYLVLPLSVEGENEYGSRADKRRYVVSQVNLFDASDVVQSAIEAELAEPNIRLVLEGEDVTGLALLPVAKVLERQENG
EVILDRSFIPACLHYGASQLLKERLKEIFILTQARANSVVQRIGAGQQTKSDLSLMREFLWLQTLNRWLPWLHLTLEQPQ
TSVDALYEGLVSFSAELDSFKPAMTAMPEPLVRDDLKQGFAGVFAQLREKLSMVQSDNVTEFSWDTNLFERRRLLRLSIP
NLNQIEGRRFVMAVHASIGTAALLQVFPSACTLSGLSQIADLVRNSQSGVPIQVLPVAPNELKAQADVAYFEIDTAHEYW
QQLKIKREPIALHVDSRVPDLSIKLYALG*

  Nucleotide sequence: 1290 bp    

>T6CP013344 KY319184:c7278-5989 [Vibrio fluvialis] [TssK]
ATGTTTATTGCCCCGCAACATTTTCAGCAGCAGGACCGCCATACGCATCAGTACATTCAGAAATATGTTGCCCTGTCTTC
ACAGGGCAGTGGTTTTGGTGTTTCGGCGCTGGAGCTTGATCATCATTACCTTAAGATAGGCAAGTTTGGTGTGGTGCATT
GTCAGGGGATTTTCCCGGAAGGGACGCTGTTTGATTGTGTCAAAGAGCTGCTGCTGGATATTCCGGAAGGTACCCTAAAC
CAACGCGTCTATCTGGTGTTGCCGTTGTCGGTGGAAGGCGAAAATGAGTACGGCAGCCGTGCAGACAAGCGCCGTTACGT
GGTGTCACAGGTTAACCTGTTTGATGCCAGTGATGTGGTGCAGAGCGCAATTGAAGCCGAGCTCGCCGAGCCGAATATCC
GTCTGGTACTCGAAGGTGAAGACGTGACGGGGCTGGCGTTGTTGCCGGTGGCGAAAGTGTTGGAACGGCAGGAAAACGGG
GAGGTCATCCTCGACCGCAGCTTTATTCCTGCGTGTCTCCACTACGGTGCCTCACAACTGCTCAAAGAGCGTTTGAAAGA
GATTTTCATCCTGACTCAAGCCCGCGCCAATAGCGTCGTGCAACGCATTGGTGCGGGTCAGCAAACCAAAAGTGATCTGA
GCCTGATGCGCGAATTTCTGTGGTTACAGACGTTAAACCGCTGGCTGCCATGGTTGCATCTGACGCTTGAACAGCCACAG
ACCAGCGTCGATGCTTTGTACGAAGGGCTGGTGAGCTTTTCCGCTGAACTCGACAGCTTTAAACCAGCGATGACGGCCAT
GCCGGAACCGCTGGTACGTGATGATCTCAAGCAGGGCTTTGCGGGCGTGTTTGCCCAACTGCGCGAGAAACTGTCGATGG
TCCAGAGCGACAACGTGACGGAATTCAGCTGGGATACCAACCTGTTCGAGCGTCGCCGCTTGCTGCGTTTGTCGATTCCG
AACCTCAATCAGATCGAAGGCCGCCGTTTTGTCATGGCGGTGCATGCGTCGATTGGTACCGCAGCACTGCTGCAGGTCTT
CCCGAGCGCGTGCACGCTGAGTGGTTTGAGCCAGATTGCCGACTTGGTGCGCAACAGTCAGTCCGGCGTGCCGATTCAGG
TGTTACCGGTTGCCCCGAATGAGCTGAAAGCGCAGGCGGATGTGGCGTATTTCGAAATCGATACCGCCCATGAGTACTGG
CAACAACTGAAAATCAAACGAGAGCCGATCGCGCTGCACGTCGACAGCCGTGTGCCGGATCTCTCCATTAAGCTCTACGC
TCTGGGTTGA