Detailed information of component protein


Summary

Component ID T6CP013343
Component protein type TssM
T6SS ID (Type) T6SS01029 experimental (Type i5)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (1137 a.a.); Nucleotide sequence (3411 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 1341..4751 (-)
NCBI ID 1185549767
GenBank KY319184
Uniprot ID A0A1W6EUJ3_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
IcmF-related_N PF14331.8 4.6e-52 165..416
IcmF-related PF06761.14 3.1e-35 472..765
IcmF_C PF06744.14 1.8e-15 1012..1117
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Inside 1-6 MMDKKK
Transmembrane helix 7-29 AILFSTLATFLVGLITCLSLRLT
Outside 30-33 GTYW
Transmembrane helix 34-56 LTPWWAVALQVTLIVLFLALVGW
Inside 57-412 GTYAYLRRPKVDETLKQHDEWRKRVLKNRFALIWKKHSKVTSNPYHVPWYVHVSADVSSDVRWLQQMGFESVESIEPVPDDLIAVRFWVSDSAVLVSVDMSFPLATRQASLDVVCELLMKKRDRQAFNGVLCTVDLDHLLQKNEIAASEFSQQYRTLLSDLNQRTGLSLPTYCVFTNMAAVRDFCELFSTLDEAAREQPFGVLRPADEGKGYDKDWFDESFDDLTRRLAITASESLKQQLHADFRASSVAGIFQLSALRYDIEDFLSLTFSQHAFDEVALHFRGFFFVNVGGEGESTDILTYMHASDLGFESLAGMQQHASSPSLFGKNLFRSCIVKEAPLVGVYRQREWRYRASR
Transmembrane helix 413-430 VAIFGGLLLLFGGFLWML
Outside 431-1136 KASFDYQQSLDNQALIKLNQYKENLKLDTIVADDLSSPVFSLSELRDINNLYNKQHRPWYVSDWLPDSSIRRFVHQTYYEELSSVLLTLMRDYILKDLFVYNSLDDKVKMLELLNYHQILYSKHRDDVDSLVNYYLTSLKEEGEGDVALLERFKLLAEDLFRSGATPPESEPELLALVRKSLSANDISELLYQHILQHPDFSRRVDMRTKLNPSYQNVFEFKPGFTGYLIPYLFTREGFEDLYNETGFQLASEAIKSYEGVMGNISGDAEMNRINRQLRERYIGDYVKYWQDLMANISWVEVSGWGEISKQIDMTVDPVYSPLSQFYNLVAVHTNLSQKKEGEPAPKESREAKEQQTEEGEPSVTAISNTSERVRASIAAPFKAMHQLVAVNEAGQSRLSIALAQLQQTRDWIEKSKETQDRGSYFLAQLQNTDSNNPLAQLNTLAADYNDPVLPVLMRGVARTTNRLAQSAMKTVINNDWSVLYGGYVRHFAGRYPFDKKAEFDASLADFSDFFKSGGQFDEFARKYAAYFDLTHGRQTQLKGFIVNQMLPLSDSYQPFSDAVRRMQSGLFIDGRVGVEFLLRAEKMSPDLTGFTLESGSKLFEYRNGPLLWQSLSWPIPANQTQDIAIITKDDKGAETREKLSGEWSWFRVADKMQSASVVGSDDVAWRYQSDSNEVSLKIKSKSAEQPFAPRFFDGLNIPIEL


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8745 - -


  Protein sequence: 1137 a.a.    

>T6CP013343 KY319184:c4751-1341 [Vibrio fluvialis] [TssM]
MMDKKKAILFSTLATFLVGLITCLSLRLTGTYWLTPWWAVALQVTLIVLFLALVGWGTYAYLRRPKVDETLKQHDEWRKR
VLKNRFALIWKKHSKVTSNPYHVPWYVHVSADVSSDVRWLQQMGFESVESIEPVPDDLIAVRFWVSDSAVLVSVDMSFPL
ATRQASLDVVCELLMKKRDRQAFNGVLCTVDLDHLLQKNEIAASEFSQQYRTLLSDLNQRTGLSLPTYCVFTNMAAVRDF
CELFSTLDEAAREQPFGVLRPADEGKGYDKDWFDESFDDLTRRLAITASESLKQQLHADFRASSVAGIFQLSALRYDIED
FLSLTFSQHAFDEVALHFRGFFFVNVGGEGESTDILTYMHASDLGFESLAGMQQHASSPSLFGKNLFRSCIVKEAPLVGV
YRQREWRYRASRVAIFGGLLLLFGGFLWMLKASFDYQQSLDNQALIKLNQYKENLKLDTIVADDLSSPVFSLSELRDINN
LYNKQHRPWYVSDWLPDSSIRRFVHQTYYEELSSVLLTLMRDYILKDLFVYNSLDDKVKMLELLNYHQILYSKHRDDVDS
LVNYYLTSLKEEGEGDVALLERFKLLAEDLFRSGATPPESEPELLALVRKSLSANDISELLYQHILQHPDFSRRVDMRTK
LNPSYQNVFEFKPGFTGYLIPYLFTREGFEDLYNETGFQLASEAIKSYEGVMGNISGDAEMNRINRQLRERYIGDYVKYW
QDLMANISWVEVSGWGEISKQIDMTVDPVYSPLSQFYNLVAVHTNLSQKKEGEPAPKESREAKEQQTEEGEPSVTAISNT
SERVRASIAAPFKAMHQLVAVNEAGQSRLSIALAQLQQTRDWIEKSKETQDRGSYFLAQLQNTDSNNPLAQLNTLAADYN
DPVLPVLMRGVARTTNRLAQSAMKTVINNDWSVLYGGYVRHFAGRYPFDKKAEFDASLADFSDFFKSGGQFDEFARKYAA
YFDLTHGRQTQLKGFIVNQMLPLSDSYQPFSDAVRRMQSGLFIDGRVGVEFLLRAEKMSPDLTGFTLESGSKLFEYRNGP
LLWQSLSWPIPANQTQDIAIITKDDKGAETREKLSGEWSWFRVADKMQSASVVGSDDVAWRYQSDSNEVSLKIKSKSAEQ
PFAPRFFDGLNIPIEL*

  Nucleotide sequence: 3411 bp    

>T6CP013343 KY319184:c4751-1341 [Vibrio fluvialis] [TssM]
ATGATGGATAAGAAAAAAGCCATTCTCTTTTCAACGCTGGCGACATTCCTGGTTGGACTGATTACGTGTCTCTCGTTGAG
GCTGACCGGGACTTACTGGCTGACGCCGTGGTGGGCGGTGGCTCTGCAAGTGACGTTGATTGTGCTGTTTCTGGCGCTGG
TGGGATGGGGAACGTACGCGTACTTGCGTCGCCCGAAAGTGGATGAAACCCTCAAGCAGCACGACGAGTGGCGTAAACGC
GTGCTCAAGAACCGCTTTGCTCTGATTTGGAAAAAGCACAGTAAGGTGACCTCTAACCCGTATCATGTGCCTTGGTATGT
GCATGTGTCGGCGGACGTGAGTTCTGACGTTCGCTGGTTGCAACAGATGGGCTTTGAGAGTGTGGAATCCATAGAACCTG
TACCGGATGACTTGATTGCGGTGCGTTTTTGGGTCTCCGACAGTGCGGTGTTGGTGTCAGTTGATATGAGTTTCCCGCTC
GCTACCCGTCAGGCAAGCCTGGATGTGGTATGCGAACTGCTGATGAAAAAGCGCGATCGTCAGGCGTTCAATGGTGTTCT
GTGCACAGTCGATCTCGATCATCTGCTACAGAAAAACGAAATTGCGGCCAGCGAGTTCAGCCAGCAGTACCGAACGCTGC
TGAGCGATTTGAACCAACGTACCGGATTGTCGCTACCGACCTACTGCGTGTTTACCAATATGGCCGCAGTACGTGATTTC
TGTGAGTTGTTTTCGACGCTGGATGAAGCCGCACGTGAACAGCCTTTTGGTGTTCTGCGTCCGGCGGACGAAGGCAAAGG
CTATGATAAAGACTGGTTTGATGAATCGTTTGACGATCTGACCCGTCGCCTGGCGATCACGGCCAGCGAATCACTCAAAC
AACAGTTACACGCGGATTTTCGTGCCTCTTCGGTGGCGGGCATTTTCCAGCTCTCTGCTCTGCGCTACGACATTGAAGAC
TTTTTGTCGCTCACCTTCAGCCAGCATGCGTTTGATGAAGTTGCGCTGCATTTTCGCGGCTTCTTCTTCGTTAACGTCGG
CGGAGAAGGGGAATCCACTGACATTCTGACTTACATGCACGCCTCGGATCTCGGCTTTGAATCTCTGGCCGGTATGCAGC
AACACGCCTCCAGCCCGAGCCTGTTTGGCAAGAATCTGTTTCGCAGCTGTATTGTTAAAGAAGCGCCATTGGTGGGTGTA
TACCGTCAACGTGAGTGGCGTTACCGTGCTTCGCGAGTTGCAATTTTTGGTGGCTTATTGCTGCTGTTTGGTGGCTTTTT
GTGGATGTTAAAGGCCAGTTTTGACTATCAGCAGTCCTTGGACAATCAGGCGTTGATCAAACTGAATCAATACAAAGAGA
ATCTGAAACTGGATACGATTGTCGCCGATGATCTCTCATCGCCCGTGTTCAGTTTGTCGGAACTGCGAGACATCAACAAT
CTGTACAACAAACAGCATCGTCCTTGGTATGTCAGTGACTGGCTGCCGGATTCGAGTATCAGACGCTTCGTCCACCAAAC
GTATTATGAAGAGCTGAGCAGCGTACTGCTGACTCTGATGCGCGACTACATCCTCAAAGATCTGTTTGTCTACAACTCGC
TGGATGACAAAGTGAAAATGCTGGAGCTGCTGAACTATCATCAGATCCTGTATAGCAAACATCGTGATGATGTCGATTCG
TTGGTCAATTACTACCTGACTTCGCTCAAAGAGGAAGGGGAAGGCGATGTCGCACTGCTCGAACGCTTTAAGTTGCTGGC
CGAAGATCTGTTCCGCAGTGGGGCCACGCCGCCGGAATCGGAACCTGAACTGCTGGCGCTGGTGCGTAAGTCGCTGTCTG
CCAACGACATCAGTGAACTGCTCTATCAGCACATTTTGCAGCACCCGGATTTTTCACGCCGTGTGGATATGCGCACCAAG
CTGAATCCGTCCTATCAGAACGTGTTCGAGTTCAAGCCTGGCTTTACCGGCTATCTGATTCCGTATCTGTTTACCCGTGA
AGGCTTTGAAGATCTGTACAACGAAACCGGCTTTCAACTGGCGTCAGAAGCGATCAAATCTTATGAAGGTGTGATGGGCA
ATATCAGCGGTGATGCTGAAATGAACCGCATCAACCGCCAGTTGCGTGAACGCTATATCGGCGATTACGTCAAATACTGG
CAGGATTTGATGGCTAACATCAGCTGGGTGGAAGTGTCTGGATGGGGTGAGATCAGCAAACAGATCGATATGACGGTCGA
TCCGGTCTATTCGCCGCTCAGCCAGTTCTACAATCTGGTCGCGGTGCATACCAACCTGAGCCAGAAGAAAGAAGGCGAAC
CCGCGCCAAAAGAGAGCCGTGAAGCCAAAGAGCAACAGACGGAAGAGGGCGAACCGAGCGTGACCGCGATCAGCAATACC
AGCGAACGCGTGCGTGCATCGATTGCTGCGCCGTTCAAGGCGATGCATCAACTGGTGGCGGTGAACGAAGCGGGGCAAAG
CCGACTCAGTATTGCGCTGGCACAGTTGCAACAAACCCGTGACTGGATAGAGAAGTCCAAAGAAACGCAGGATCGCGGCA
GCTACTTCCTGGCGCAGTTGCAAAACACCGATTCCAATAACCCGTTGGCCCAGCTCAATACACTGGCGGCGGATTACAAT
GATCCCGTTCTGCCGGTATTGATGCGCGGCGTGGCGCGAACGACTAACCGATTGGCACAAAGTGCGATGAAAACGGTGAT
CAATAACGACTGGAGCGTGCTGTACGGCGGCTATGTGCGTCATTTTGCCGGCCGTTACCCGTTTGATAAGAAAGCAGAGT
TCGATGCCTCGTTGGCCGATTTTTCGGATTTCTTTAAATCCGGTGGTCAGTTTGATGAGTTTGCGCGGAAATACGCTGCC
TACTTTGACCTGACGCATGGGCGCCAAACGCAGCTCAAAGGCTTTATCGTCAATCAGATGCTGCCGTTGTCCGACTCTTA
TCAACCGTTCAGCGATGCGGTCAGACGCATGCAAAGTGGCCTGTTTATTGATGGGCGTGTCGGCGTCGAGTTTTTGCTGC
GGGCGGAAAAGATGTCGCCGGATCTGACCGGATTTACTCTCGAATCAGGCAGCAAACTGTTTGAATACCGCAATGGTCCG
CTGCTGTGGCAATCGCTCAGCTGGCCGATCCCGGCTAACCAAACTCAGGACATCGCCATCATCACCAAAGATGATAAAGG
GGCAGAAACCCGCGAGAAGCTGAGTGGTGAATGGAGCTGGTTCCGTGTCGCAGACAAGATGCAGAGCGCATCGGTGGTGG
GCAGTGATGATGTGGCCTGGCGCTATCAGTCAGACAGCAACGAAGTCAGCCTCAAGATTAAGTCGAAAAGTGCGGAGCAG
CCGTTTGCCCCCCGTTTCTTTGACGGCCTGAACATTCCAATCGAACTATGA