Detailed information of component protein


Summary

Component ID T6CP013341
Component protein type TssA
T6SS ID (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (467 a.a.); Nucleotide sequence (1401 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 16732..18132 (+)
NCBI ID 1185549756
GenBank KY319183
Uniprot ID A0A1W6EUI1_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasJ PF16989.7 3.1e-75 215..461
ImpA_N PF06812.14 3.2e-25 12..125
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-466 MELTEYRRCVAQPIAGDNPVGERLIDDPLFDFIEDQMMKVGSLSHSSVQWDEVEHSALKLLQDKTKDIKLMVYLLQCLHNQLSPSRFILSFELMSDFMASFWEESYPAPGKRGNLPRRKFFSQIAQRFSMATEKIDFNQFDAQDRQALGEAVDAWQKVIEAQGLSSDVVEAVARSVQSELNKVEARQQAEQQQTAKPADTPRPTTANSALSVDNSSDKAAKQTLLKVADFLAEQEFGIALSIRLRRYAVWGAITTLPDHKADGETMLRGMQQDRIKDYQDQMRHADLTLWRKVEQSLTLSPYWFDGQLMSFTIAQNLGKESWCLAITEETQQFLARMPSLLELKFKGGEPFVSDSVKEWLASGSGSTGGHSVGGDWQEKRKEAMALAKEGGIAVALSMLNDGLVAATEPRDKFYWRMLSADLLNANHLDAMAKEQYQTLHNQVTTMQVTDWEPSLVEQLERYTTSE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9949 - -


  Protein sequence: 467 a.a.    

>T6CP013341 KY319183:16732-18132 [Vibrio fluvialis] [TssA]
MELTEYRRCVAQPIAGDNPVGERLIDDPLFDFIEDQMMKVGSLSHSSVQWDEVEHSALKLLQDKTKDIKLMVYLLQCLHN
QLSPSRFILSFELMSDFMASFWEESYPAPGKRGNLPRRKFFSQIAQRFSMATEKIDFNQFDAQDRQALGEAVDAWQKVIE
AQGLSSDVVEAVARSVQSELNKVEARQQAEQQQTAKPADTPRPTTANSALSVDNSSDKAAKQTLLKVADFLAEQEFGIAL
SIRLRRYAVWGAITTLPDHKADGETMLRGMQQDRIKDYQDQMRHADLTLWRKVEQSLTLSPYWFDGQLMSFTIAQNLGKE
SWCLAITEETQQFLARMPSLLELKFKGGEPFVSDSVKEWLASGSGSTGGHSVGGDWQEKRKEAMALAKEGGIAVALSMLN
DGLVAATEPRDKFYWRMLSADLLNANHLDAMAKEQYQTLHNQVTTMQVTDWEPSLVEQLERYTTSE*

  Nucleotide sequence: 1401 bp    

>T6CP013341 KY319183:16732-18132 [Vibrio fluvialis] [TssA]
ATGGAATTAACCGAATACCGCCGCTGTGTGGCACAGCCGATTGCCGGAGATAATCCGGTCGGTGAACGTTTGATTGACGA
TCCCCTGTTTGACTTCATTGAAGATCAGATGATGAAAGTCGGCTCACTGTCGCATAGCAGCGTGCAGTGGGACGAAGTGG
AACACAGCGCGCTGAAATTACTGCAGGACAAGACCAAAGACATCAAGCTGATGGTGTATCTGCTGCAATGTCTTCACAAC
CAACTTTCGCCTTCCCGTTTTATTCTCTCATTTGAACTGATGAGCGATTTTATGGCGTCTTTCTGGGAAGAAAGTTACCC
CGCACCGGGCAAGCGCGGCAATCTGCCAAGACGCAAATTTTTCAGTCAGATTGCGCAGCGTTTTTCGATGGCGACTGAAA
AAATCGATTTTAATCAGTTTGATGCACAGGACCGCCAAGCATTAGGTGAGGCGGTGGATGCGTGGCAAAAAGTCATTGAA
GCGCAAGGGCTGAGTTCGGATGTGGTCGAAGCGGTCGCTCGCTCGGTTCAGAGTGAACTGAATAAAGTGGAAGCGCGTCA
GCAAGCCGAGCAGCAGCAAACGGCCAAGCCTGCAGATACGCCGCGCCCGACCACGGCCAACTCAGCCTTGTCGGTGGATA
ATTCCAGTGACAAAGCGGCCAAGCAAACGCTGCTCAAAGTTGCGGATTTTCTTGCTGAGCAGGAGTTTGGCATTGCGCTG
TCGATTCGCCTGCGCCGTTACGCCGTTTGGGGGGCGATTACCACGCTGCCGGATCACAAAGCCGACGGTGAAACCATGCT
GCGCGGCATGCAGCAAGATCGAATTAAAGATTATCAGGACCAGATGCGCCATGCGGATCTGACGCTTTGGCGCAAGGTCG
AGCAGAGCCTCACGCTCTCGCCGTACTGGTTTGATGGCCAACTGATGAGTTTCACCATCGCGCAAAACTTGGGCAAAGAG
AGCTGGTGTCTGGCTATCACCGAAGAAACGCAACAATTTCTCGCCCGTATGCCTTCGCTGCTGGAACTCAAATTCAAAGG
GGGCGAACCGTTTGTCTCCGACAGCGTGAAGGAGTGGCTGGCATCCGGCAGCGGCTCGACTGGCGGGCACAGTGTGGGCG
GTGATTGGCAGGAAAAGCGTAAAGAAGCGATGGCTTTGGCTAAGGAAGGCGGCATCGCGGTCGCCTTGTCGATGCTCAAT
GATGGCCTGGTGGCAGCCACGGAACCGCGCGACAAATTTTACTGGCGGATGCTCTCTGCCGATCTGCTCAACGCCAATCA
TCTCGATGCGATGGCGAAAGAGCAGTACCAAACTTTACATAATCAAGTCACCACCATGCAGGTCACCGATTGGGAGCCGT
CGCTGGTGGAACAACTAGAACGATATACAACGTCAGAGTAA