Detailed information of component protein


Summary

Component ID T6CP013340
Component protein type TssH
T6SS ID (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (871 a.a.); Nucleotide sequence (2613 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 11856..14468 (+)
NCBI ID 1185549753
GenBank KY319183
Uniprot ID A0A1W6EUH4_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
AAA_2 PF07724.16 1.6e-37 608..769
AAA_lid_9 PF17871.3 8.7e-29 362..453
ClpB_D2-small PF10431.11 4e-10 775..849
AAA PF00004.31 5e-09 222..352
Clp_N PF02861.22 8.9e-05 24..72
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-870 VIRIELPTLISKLNAQSKLALEQAASLCIERQHPEVTFEHYLDVLTDNPLSDVRLILKQANLDLDTVKQALAASYAREQVLDTYPAFSPLLVELLQEAWLLSTTELNQSELRSGAIFLAAITRADRYLPFKLISLFESINRENLKKHFDVIVADSAETEVSKPAATKGVTNSLEGNNSPLTKYCTNVTEQARNQELDPVLCRENELNLMIDILCRRRKNNPIVVGDAGVGKSAMIEGLALRVVAGTVPTQLQNVELLSLDLGLLQAGASVKGEFEKRLKGVIDAIKSSPKPVILFIDEAHTLIGSGNQEGGSDAANLLKPALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLEEPTIHQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYISGRQLPDKAIDVLDTACARIAINMTTPPKRLALLETACHQRQLEIDMLERAQYLGREVDHARLDELRTQELADEAEKASLTASWQQQKALIESIIALRAELMAMSTADDVDEDARSALQADLAAQYQALEAIAHHERLMHPQVDAEQIAEVIADWTGVPVDQMNTDELYKITHLTDILGAAIKGQDTAIERVHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQFLTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQAFDKGELADGEGRLIDCQNIVFFLTSNLGYQTIVDFADDPKALDEALYPELAAFFKPALLARMEVIPYMPLNKEILELIVKGKLARLEKLFRDRYNAEVVIEDRLIEEILNRATRSENGARMLEAIIEGQLLPPVSLALLNKLAEKQPVHRIHLDAQDGEFKGEVE


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9888 - -


  Protein sequence: 871 a.a.    

>T6CP013340 KY319183:11856-14468 [Vibrio fluvialis] [TssH]
VIRIELPTLISKLNAQSKLALEQAASLCIERQHPEVTFEHYLDVLTDNPLSDVRLILKQANLDLDTVKQALAASYAREQV
LDTYPAFSPLLVELLQEAWLLSTTELNQSELRSGAIFLAAITRADRYLPFKLISLFESINRENLKKHFDVIVADSAETEV
SKPAATKGVTNSLEGNNSPLTKYCTNVTEQARNQELDPVLCRENELNLMIDILCRRRKNNPIVVGDAGVGKSAMIEGLAL
RVVAGTVPTQLQNVELLSLDLGLLQAGASVKGEFEKRLKGVIDAIKSSPKPVILFIDEAHTLIGSGNQEGGSDAANLLKP
ALARGELSTVAATTWKEYKKYFEKDPALTRRFQLVKLEEPTIHQAVDILRGLNSVYEKAHNVLITDDALKAAAELSARYI
SGRQLPDKAIDVLDTACARIAINMTTPPKRLALLETACHQRQLEIDMLERAQYLGREVDHARLDELRTQELADEAEKASL
TASWQQQKALIESIIALRAELMAMSTADDVDEDARSALQADLAAQYQALEAIAHHERLMHPQVDAEQIAEVIADWTGVPV
DQMNTDELYKITHLTDILGAAIKGQDTAIERVHRHLLTARADLRRPGRPKGAFLLVGPSGVGKTETVVQLAEQLYGGKQF
LTTINMSEYQEKHTVSRLIGSPPGYVGYGEGGILTEAIRKMPYSVVLLDEVEKAHPEVLNIFYQAFDKGELADGEGRLID
CQNIVFFLTSNLGYQTIVDFADDPKALDEALYPELAAFFKPALLARMEVIPYMPLNKEILELIVKGKLARLEKLFRDRYN
AEVVIEDRLIEEILNRATRSENGARMLEAIIEGQLLPPVSLALLNKLAEKQPVHRIHLDAQDGEFKGEVE*

  Nucleotide sequence: 2613 bp    

>T6CP013340 KY319183:11856-14468 [Vibrio fluvialis] [TssH]
GTGATTCGTATTGAACTACCCACTCTGATTTCAAAATTAAACGCCCAAAGCAAGCTGGCCCTTGAGCAGGCTGCCTCTCT
GTGTATCGAACGTCAGCATCCGGAAGTGACATTTGAGCATTATTTGGATGTGCTGACGGACAACCCGCTGTCGGATGTGC
GCTTGATTCTCAAACAAGCCAATCTGGATCTGGATACCGTGAAACAGGCTTTGGCCGCCAGCTATGCGCGCGAGCAGGTG
CTCGATACTTATCCGGCATTTTCACCGCTGCTGGTCGAACTGCTGCAAGAAGCATGGCTGCTTTCTACCACCGAACTGAA
CCAAAGCGAATTGCGCTCGGGTGCAATTTTCCTCGCGGCAATCACACGTGCTGATCGTTATCTGCCTTTCAAACTGATCA
GTCTGTTTGAAAGCATTAACCGTGAAAATCTGAAAAAACATTTTGATGTGATTGTGGCTGATTCGGCAGAAACTGAAGTG
AGCAAACCAGCAGCAACCAAGGGTGTTACCAATAGTCTGGAAGGGAACAATTCGCCGCTGACCAAGTACTGCACCAATGT
GACTGAACAGGCGCGTAATCAAGAACTGGATCCGGTGCTGTGTCGTGAGAACGAACTCAACCTGATGATTGACATTCTCT
GCCGCCGCCGCAAAAACAACCCGATTGTGGTCGGGGATGCGGGTGTCGGTAAAAGTGCCATGATTGAAGGCTTGGCGCTG
CGTGTGGTCGCAGGCACCGTGCCGACACAGCTCCAAAACGTTGAGCTGCTCTCGCTGGATCTCGGTTTGCTGCAAGCGGG
TGCTTCGGTGAAAGGGGAGTTTGAGAAACGCTTGAAAGGCGTGATCGATGCGATTAAGAGCTCGCCAAAGCCTGTCATTC
TGTTTATCGATGAAGCGCACACCTTGATCGGCTCCGGAAATCAGGAAGGCGGCAGTGACGCGGCAAACTTGCTGAAACCC
GCTTTGGCGCGCGGCGAACTGAGCACCGTCGCGGCGACGACGTGGAAAGAGTACAAAAAATATTTTGAAAAAGATCCGGC
ATTGACGCGCCGTTTCCAACTGGTGAAGTTAGAAGAACCGACGATTCACCAAGCGGTCGACATTCTGCGCGGCCTCAACA
GTGTGTATGAAAAAGCGCATAACGTGTTGATCACCGATGATGCGTTAAAAGCGGCGGCGGAATTGTCTGCTCGTTATATC
TCAGGTCGTCAGCTGCCGGATAAAGCGATTGATGTGCTGGACACCGCTTGTGCCCGTATCGCCATCAACATGACCACGCC
ACCCAAACGTCTGGCGCTGCTCGAAACTGCGTGTCACCAACGTCAGTTGGAAATTGACATGCTGGAGCGCGCGCAATACC
TCGGTCGGGAAGTCGATCATGCTCGTCTGGATGAGCTGCGCACTCAGGAACTGGCGGACGAAGCGGAAAAAGCCTCGCTG
ACCGCAAGCTGGCAGCAACAAAAAGCACTGATTGAATCGATCATCGCTTTGCGAGCGGAACTGATGGCCATGTCGACGGC
AGATGACGTGGATGAGGACGCACGCTCTGCGCTGCAGGCGGATCTCGCAGCGCAATATCAGGCTCTGGAGGCAATAGCGC
ACCATGAGCGTTTGATGCACCCACAGGTCGATGCAGAGCAAATCGCGGAAGTCATTGCCGACTGGACGGGCGTTCCGGTT
GATCAAATGAACACCGATGAGCTGTATAAAATTACCCACCTGACGGACATTCTCGGCGCGGCAATCAAAGGTCAGGACAC
TGCGATTGAGCGTGTCCATCGCCATCTGCTGACGGCGCGTGCGGATCTGCGTCGTCCGGGACGTCCGAAAGGCGCTTTCT
TGCTGGTGGGACCCAGTGGCGTAGGTAAGACAGAAACGGTGGTGCAGCTTGCCGAGCAGCTCTACGGTGGTAAGCAATTC
CTCACCACCATCAACATGTCGGAATATCAAGAGAAGCATACAGTTTCGCGTCTGATCGGGTCACCTCCAGGTTATGTGGG
CTACGGGGAAGGAGGCATCCTGACCGAAGCGATTCGCAAAATGCCATATTCCGTTGTGCTGCTGGATGAAGTGGAAAAAG
CTCACCCTGAAGTGCTGAACATTTTTTACCAAGCGTTTGATAAAGGTGAACTGGCCGATGGCGAAGGGCGCTTAATCGAC
TGCCAGAACATTGTGTTCTTCCTGACGTCCAACCTTGGTTATCAAACCATCGTTGATTTTGCTGATGATCCCAAAGCTCT
GGATGAAGCGCTGTATCCAGAACTGGCGGCATTCTTTAAGCCAGCTCTGTTGGCGCGTATGGAAGTCATTCCATATATGC
CACTCAACAAAGAGATTCTTGAGCTGATCGTCAAAGGCAAACTGGCGCGTCTGGAGAAACTGTTCCGTGATCGCTACAAC
GCTGAGGTGGTGATTGAAGATCGCCTGATTGAAGAGATCTTAAATCGCGCCACGCGCAGCGAAAACGGTGCACGCATGCT
TGAAGCCATCATTGAAGGTCAATTGTTGCCGCCCGTATCGCTGGCGCTGTTAAATAAACTGGCGGAGAAGCAACCGGTAC
ATCGTATTCATCTTGATGCGCAGGACGGTGAATTCAAAGGAGAGGTAGAGTAA