Detailed information of component protein


Summary

Component ID T6CP013338
Component protein type TssK
T6SS ID (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (445 a.a.); Nucleotide sequence (1335 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 9719..11053 (+)
NCBI ID 1185549751
GenBank KY319183
Uniprot ID A0A1W6EUH2_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 1.9e-155 19..442
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-444 MFARNRVIWNEGLFIKPQHFQQQQRYVEYHIDERMTAVSRYLYGVSELSLNPEYLSFGRIAIERAVGIMPDGTAFRIPQEDAMPDALEIEDASLANQLVYLAVPLRSESLMEVNWPEERGTGRYVSRRLEVRDVHTVQGDTTTIDVSPVRMQLMLEKEDRSSFASIAIARILEKRPDGSVVMDPDFIPCHLNVVGNAALHRFINEMSGLMRERAKNIAQRISSPSQGGVADVSDFMLLQALNRLQPQMQHLAELRSLHPERLFECLASVCGELATFTDESRLPPALPSYNHDMPSQSFGPLIRNLRQSLSVVLEPRAVSIQLDKRKYGLMVAPVHDPQLMDSAEFIIAVKARMPLDDLRRLFTQQTKVSSVEKIRELISLQLPGIPLISLPVAPRQLPYHAGYTYYQLDKTSPAWAMLNHSSGFAFHVAAAFGDLDLQFWAIRS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9948 - -


  Protein sequence: 445 a.a.    

>T6CP013338 KY319183:9719-11053 [Vibrio fluvialis] [TssK]
MFARNRVIWNEGLFIKPQHFQQQQRYVEYHIDERMTAVSRYLYGVSELSLNPEYLSFGRIAIERAVGIMPDGTAFRIPQE
DAMPDALEIEDASLANQLVYLAVPLRSESLMEVNWPEERGTGRYVSRRLEVRDVHTVQGDTTTIDVSPVRMQLMLEKEDR
SSFASIAIARILEKRPDGSVVMDPDFIPCHLNVVGNAALHRFINEMSGLMRERAKNIAQRISSPSQGGVADVSDFMLLQA
LNRLQPQMQHLAELRSLHPERLFECLASVCGELATFTDESRLPPALPSYNHDMPSQSFGPLIRNLRQSLSVVLEPRAVSI
QLDKRKYGLMVAPVHDPQLMDSAEFIIAVKARMPLDDLRRLFTQQTKVSSVEKIRELISLQLPGIPLISLPVAPRQLPYH
AGYTYYQLDKTSPAWAMLNHSSGFAFHVAAAFGDLDLQFWAIRS*

  Nucleotide sequence: 1335 bp    

>T6CP013338 KY319183:9719-11053 [Vibrio fluvialis] [TssK]
ATGTTTGCGCGTAACCGTGTCATTTGGAATGAGGGGCTGTTTATCAAGCCGCAACATTTCCAGCAGCAGCAACGTTATGT
GGAGTACCACATCGACGAGCGCATGACCGCTGTCAGCCGTTATCTGTACGGTGTGTCTGAGCTGTCACTCAATCCTGAAT
ATTTGTCTTTTGGTCGCATTGCCATTGAACGCGCGGTCGGCATCATGCCTGATGGTACGGCGTTTCGCATTCCTCAGGAA
GACGCGATGCCAGATGCCTTAGAAATCGAAGACGCGTCACTCGCTAATCAACTGGTGTATCTGGCGGTTCCGCTGCGCAG
TGAATCGTTGATGGAAGTGAACTGGCCGGAAGAAAGGGGTACCGGGCGCTATGTCAGTCGCCGCTTGGAAGTGCGTGACG
TGCACACAGTACAGGGCGATACCACGACCATTGATGTCTCGCCAGTGCGCATGCAACTGATGCTGGAAAAAGAAGATCGC
AGCTCGTTTGCCTCCATCGCCATTGCACGCATTCTGGAAAAACGTCCGGACGGCAGCGTGGTGATGGATCCGGATTTCAT
CCCTTGTCACCTCAACGTGGTGGGCAATGCTGCGCTGCACCGTTTCATCAACGAAATGTCCGGTCTGATGCGCGAGCGCG
CCAAGAACATTGCGCAGCGTATCAGCTCGCCGTCTCAGGGCGGCGTTGCCGATGTGTCGGATTTTATGTTGCTGCAAGCA
CTGAACCGCCTACAGCCGCAGATGCAACATTTGGCAGAGTTGCGTAGCCTTCATCCCGAACGTTTGTTTGAGTGCCTGGC
GTCAGTGTGTGGTGAACTGGCGACGTTTACGGACGAAAGCCGTCTGCCGCCAGCACTGCCAAGTTACAACCACGACATGC
CCAGCCAGTCTTTTGGTCCCTTAATTCGCAATCTGCGTCAGAGTTTGAGCGTGGTGCTGGAGCCTCGTGCCGTTTCGATT
CAACTGGACAAGCGCAAGTACGGCCTGATGGTGGCGCCGGTGCACGATCCGCAGTTGATGGACAGCGCCGAATTTATCAT
TGCGGTGAAAGCACGGATGCCGCTCGACGATCTGCGTCGCCTGTTTACGCAGCAGACCAAAGTGTCGTCGGTGGAGAAAA
TTCGCGAACTCATTTCCCTGCAACTGCCGGGTATTCCGTTGATTTCATTGCCTGTGGCTCCTCGTCAGTTGCCATATCAC
GCAGGTTATACCTATTACCAGCTGGATAAAACCAGCCCAGCTTGGGCGATGCTGAATCATTCGAGCGGCTTTGCGTTCCA
CGTCGCTGCGGCATTTGGTGATCTCGACCTGCAATTCTGGGCGATTAGGAGTTAA