SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP013336
Component protein type	TssG
T6SS ID (Type)	T6SS01028 (Type i1)
Strain	Vibrio fluvialis 85003
Replicon	chromosome
Sequence	Protein sequence (339 a.a.); Nucleotide sequence (1017 bp)
Reference	[1] Huang Y, Du P, Zhao M, et al. Functional Characterization and Conditional Regulation of the Type VI Secretion System in Vibrio fluvialis. Front Microbiol. 2017 Mar 30;8:528. doi: 10.3389/fmicb.2017.00528. eCollection 2017. PMID: 28424671

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	6735..7751 (+)
NCBI ID	1185549748
GenBank	KY319183
Uniprot ID	A0A1W6EUG8_VIBFL
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_TssG	PF06996.13	3.4e-89	29..324

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-338	MGNTDRNAAVDITADSQLVPQSHLPGDVRAYNFYQLVELLQKLQQFNPESEEWERQCQLVFSANPSLGFSPSDVNSLHERADERLVMLTNFFGLSGAQSPLPGFIIEQLVNEEPGGFKQPFLDFFNNRLINLVYRIWRKYRYYVRFQPDAKDAFSAQLFALVGLGDTDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLQDVQIRQWVRRKVHIDKSQQLSLGQQNAQLGVDSMVGESVMDCNGKFVICIGKLSRERFADFLPSGKEHQPLCKLVEFILREQMAYDVELTMDEDEAPKLSLAADSGVALGWTSFLGDNAQDQHVLIQVRQ

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9918	-	-

Protein sequence: 339 a.a.

						>T6CP013336 KY319183:6735-7751 [Vibrio fluvialis] [TssG]
MGNTDRNAAVDITADSQLVPQSHLPGDVRAYNFYQLVELLQKLQQFNPESEEWERQCQLVFSANPSLGFSPSDVNSLHER
ADERLVMLTNFFGLSGAQSPLPGFIIEQLVNEEPGGFKQPFLDFFNNRLINLVYRIWRKYRYYVRFQPDAKDAFSAQLFA
LVGLGDTDLRGETPINWCKMLAYAGTLAGRSRSPQVVAGIIAHCFDLQDVQIRQWVRRKVHIDKSQQLSLGQQNAQLGVD
SMVGESVMDCNGKFVICIGKLSRERFADFLPSGKEHQPLCKLVEFILREQMAYDVELTMDEDEAPKLSLAADSGVALGWT
SFLGDNAQDQHVLIQVRQ*					

Nucleotide sequence: 1017 bp

						>T6CP013336 KY319183:6735-7751 [Vibrio fluvialis] [TssG]
ATGGGGAACACAGACCGGAATGCAGCCGTTGATATAACGGCTGACAGCCAGCTGGTGCCCCAATCGCACTTGCCTGGTGA
TGTACGTGCTTACAACTTCTATCAGTTGGTCGAATTGTTACAAAAACTGCAGCAATTCAACCCAGAGTCGGAAGAGTGGG
AGCGTCAGTGTCAGTTGGTGTTCAGTGCGAACCCAAGCCTTGGTTTTTCGCCATCAGACGTGAATTCTCTGCACGAGCGC
GCAGATGAACGCCTGGTGATGCTGACCAACTTTTTTGGTTTGTCTGGCGCGCAGTCACCCTTGCCAGGATTCATCATCGA
GCAACTGGTGAATGAAGAGCCGGGTGGTTTTAAGCAGCCATTTCTCGATTTTTTTAACAATCGGCTGATCAACCTCGTGT
ATCGCATCTGGCGAAAGTATCGCTATTACGTGCGCTTTCAGCCGGATGCTAAAGACGCCTTTTCCGCTCAGTTGTTTGCA
TTGGTCGGGCTGGGTGATACCGACTTGCGCGGCGAGACACCCATCAACTGGTGCAAGATGCTCGCTTACGCTGGCACTTT
GGCCGGACGCAGCCGCTCACCGCAGGTGGTGGCTGGCATCATCGCCCACTGTTTCGATTTGCAGGATGTGCAAATTCGCC
AGTGGGTGCGCCGTAAGGTGCATATCGACAAATCCCAGCAATTGTCGCTGGGGCAGCAGAACGCTCAACTTGGCGTTGAC
AGCATGGTGGGTGAATCAGTGATGGACTGCAACGGTAAGTTTGTCATCTGTATCGGTAAGTTGTCGCGCGAGCGTTTCGC
CGATTTTCTTCCTTCCGGTAAGGAACACCAACCGCTGTGTAAATTGGTGGAATTTATTTTGCGTGAGCAGATGGCCTACG
ACGTAGAGCTGACCATGGATGAAGATGAAGCGCCAAAACTGAGTCTGGCCGCTGACAGTGGTGTGGCTCTTGGATGGACT
TCGTTTCTGGGTGACAACGCGCAAGACCAACACGTTCTGATTCAAGTGAGGCAATAA					