Detailed information of component protein


Summary

Component ID T6CP013335
Component protein type TssF
T6SS ID (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (590 a.a.); Nucleotide sequence (1770 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 5002..6771 (+)
NCBI ID 1185549747
GenBank KY319183
Uniprot ID A0A1W6EUH3_VIBFL
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 7.6e-156 5..584
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-589 MTQDKYFREELAFLKEQGREFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSIINMLWPNYLRPVPSMSVVAFTPDKSVSEKQTITRGTQLDSKPVFGTKCHFRTCRDVALYPLHCLDANAEHTREATTIKLAMKMNGDISIGDAELGDLRFYLGGDKYSSQMLYLWLNHYLDKVTVEVNGAVFTLPRNTFATVGFKSDESLLPYPTNVYEGYRILQEYLSFPEAFHFFDLKGLGQALPKSVHGEFTLHIHLSKTLPADVRVRKDNFQLYCTPVINLFEHDADPIDLNGRKSEYRIVPSSRYPAHYEVFSVDSVVGWQDNSQAGQRVRGEKRVYSSFESFQHEVERVRHRQALYYRTRIKESIRGDGFDSFVSFIRGDETLSVDVDEAVSIKLTCTNRLLPLELGIGDICEPTDTSPPYATFRNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSCVLRAYDFRALVDRQAERVARLRMDGISKIESQPVDKMLRGLPVRGLQSTLYIDQAGFGSEGDLYLFGTVLSHFFALYASINSFHELVVINVSNQEKYTWGTQTGMQPLI


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9905 - -


  Protein sequence: 590 a.a.    

>T6CP013335 KY319183:5002-6771 [Vibrio fluvialis] [TssF]
MTQDKYFREELAFLKEQGREFTEIHPQLSRFLHGRTTDPDVERLLEGFAFLTARLREKVEDEFPELTHSIINMLWPNYLR
PVPSMSVVAFTPDKSVSEKQTITRGTQLDSKPVFGTKCHFRTCRDVALYPLHCLDANAEHTREATTIKLAMKMNGDISIG
DAELGDLRFYLGGDKYSSQMLYLWLNHYLDKVTVEVNGAVFTLPRNTFATVGFKSDESLLPYPTNVYEGYRILQEYLSFP
EAFHFFDLKGLGQALPKSVHGEFTLHIHLSKTLPADVRVRKDNFQLYCTPVINLFEHDADPIDLNGRKSEYRIVPSSRYP
AHYEVFSVDSVVGWQDNSQAGQRVRGEKRVYSSFESFQHEVERVRHRQALYYRTRIKESIRGDGFDSFVSFIRGDETLSV
DVDEAVSIKLTCTNRLLPLELGIGDICEPTDTSPPYATFRNITVPSQSLRPVLDGSLLWTLISNLSLNYLSLLSKDALSC
VLRAYDFRALVDRQAERVARLRMDGISKIESQPVDKMLRGLPVRGLQSTLYIDQAGFGSEGDLYLFGTVLSHFFALYASI
NSFHELVVINVSNQEKYTWGTQTGMQPLI*

  Nucleotide sequence: 1770 bp    

>T6CP013335 KY319183:5002-6771 [Vibrio fluvialis] [TssF]
ATGACTCAAGACAAGTATTTCAGGGAAGAGCTCGCTTTTCTTAAAGAGCAGGGGAGAGAATTTACCGAAATTCACCCTCA
GCTGTCGCGCTTTCTGCATGGCAGAACAACTGACCCGGACGTTGAACGTCTGTTGGAAGGTTTTGCGTTCCTGACTGCGC
GTCTGCGTGAAAAAGTCGAAGATGAATTCCCTGAACTGACACACTCGATCATCAACATGCTGTGGCCGAACTATTTGCGG
CCCGTTCCGAGCATGAGTGTGGTGGCCTTTACACCGGACAAAAGCGTCAGTGAAAAGCAGACCATTACACGCGGCACACA
ACTGGATAGCAAACCCGTGTTTGGCACTAAATGCCATTTTCGAACCTGCCGAGATGTTGCTCTCTATCCGCTTCATTGTC
TGGACGCCAACGCGGAACACACGCGCGAAGCAACCACCATTAAATTAGCGATGAAGATGAACGGCGACATTTCGATTGGT
GATGCTGAACTGGGTGATTTGCGTTTTTACTTAGGTGGGGACAAGTACAGTTCACAAATGCTGTATCTGTGGCTCAACCA
CTATCTGGATAAAGTCACCGTTGAAGTGAATGGTGCGGTGTTTACTCTGCCGCGTAATACGTTTGCAACTGTGGGCTTTA
AGAGCGACGAATCGTTGTTGCCTTATCCAACTAATGTTTACGAAGGCTACCGCATTTTGCAGGAATACCTGTCATTTCCG
GAAGCGTTCCACTTTTTTGATCTCAAGGGATTAGGGCAAGCACTGCCAAAATCGGTGCACGGCGAATTCACGCTGCACAT
TCATTTATCCAAAACGTTGCCTGCCGACGTTCGCGTGCGTAAGGACAATTTTCAGCTCTATTGCACCCCAGTGATCAACC
TATTCGAACATGATGCCGACCCAATCGATCTCAATGGTCGCAAATCGGAATACCGTATTGTGCCGTCAAGCCGCTATCCG
GCGCACTATGAAGTGTTCAGCGTTGATAGCGTGGTGGGTTGGCAGGACAACAGCCAAGCGGGTCAACGGGTGCGTGGCGA
GAAGCGTGTGTACTCCTCATTTGAAAGCTTTCAGCACGAAGTAGAACGCGTTCGTCATCGTCAGGCGTTGTATTACCGCA
CACGCATCAAAGAAAGTATTCGCGGTGACGGCTTTGACTCATTTGTGTCCTTTATTCGCGGCGATGAAACCCTGTCGGTT
GATGTTGATGAAGCGGTGTCAATCAAGCTGACCTGCACCAACCGTCTGTTACCGTTGGAACTGGGCATTGGTGACATTTG
TGAGCCGACCGATACCTCGCCGCCGTATGCGACGTTTCGCAACATCACCGTGCCGTCGCAGTCACTGCGTCCGGTTCTTG
ATGGCAGCCTGCTGTGGACACTGATTTCCAACTTGTCACTCAACTATTTGTCGCTGCTGTCCAAAGATGCGCTCAGCTGT
GTGTTGCGTGCTTACGATTTTCGCGCGCTGGTCGATCGTCAGGCAGAGCGTGTGGCGCGTCTGCGCATGGACGGCATCAG
CAAAATCGAATCACAACCGGTGGACAAAATGCTGCGAGGCTTACCCGTGCGCGGCCTGCAATCGACCCTCTACATTGATC
AGGCTGGTTTTGGTTCAGAAGGCGATTTGTATCTGTTTGGCACGGTACTGAGCCATTTTTTTGCGCTCTACGCCAGCATC
AATTCGTTTCATGAGCTGGTCGTCATCAACGTTAGTAACCAAGAGAAATACACATGGGGAACACAGACCGGAATGCAGCC
GTTGATATAA