Detailed information of component protein


Summary

Component ID T6CP013334
Component protein type TssE
T6SS ID (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (146 a.a.); Nucleotide sequence (438 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) -
Coordinate (Strand) 4559..4996 (+)
NCBI ID 1185549746
GenBank KY319183
Uniprot ID A0A0X8LJJ4_VIBFL
KEGG ID vfl:AL536_06735
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 1.9e-15 38..123

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-145 MTYIAPEESAFGVGFFERLEANAKPMSLTQGPDAWDVLESVKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETMDLSLRIKLAIQHCLERYEPRLKQVLVRADSDHFNPLTLRFHIVASINCDALHKKVQFSLLLDQNRKYRVF



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9880 - -



  Protein sequence: 146 a.a.    

>T6CP013334 KY319183:4559-4996 [Vibrio fluvialis] [TssE]
MTYIAPEESAFGVGFFERLEANAKPMSLTQGPDAWDVLESVKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETMDLSLR
IKLAIQHCLERYEPRLKQVLVRADSDHFNPLTLRFHIVASINCDALHKKVQFSLLLDQNRKYRVF*

  Nucleotide sequence: 438 bp    

>T6CP013334 KY319183:4559-4996 [Vibrio fluvialis] [TssE]
ATGACTTACATTGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTCTTTGAACGTTTGGAAGCCAATGCTAAACCCATGTC
TCTGACCCAAGGGCCAGATGCATGGGATGTACTCGAATCCGTTAAGCGTAATGTGTCCAATATCCTCAATACACGAATCG
GTGGTGCTCAAAGCGCCCCGCATCTCGGGTTAGTGGATTTTAACGACGCTACTTTGGAAACCATGGACTTGTCGCTGCGC
ATCAAACTGGCGATTCAGCATTGTCTGGAACGTTATGAGCCGCGCTTAAAACAGGTACTGGTGCGTGCCGACTCGGACCA
TTTCAATCCTTTAACGCTGCGTTTCCACATTGTGGCCAGCATTAACTGCGATGCATTACACAAGAAAGTTCAGTTCAGTC
TGTTACTGGATCAAAACAGAAAGTATCGAGTGTTTTAA