Detailed information of component protein
Summary
| Component ID | T6CP013334 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01028  (Type i1) |
| Strain | Vibrio fluvialis 85003 |
| Replicon | chromosome |
| Sequence | Protein sequence (146 a.a.); Nucleotide sequence (438 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | - |
| Coordinate (Strand) | 4559..4996 (+) |
| NCBI ID | 1185549746 |
| GenBank | KY319183 |
| Uniprot ID | A0A0X8LJJ4_VIBFL |
| KEGG ID | vfl:AL536_06735 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.9e-15 | 38..123 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-145 | MTYIAPEESAFGVGFFERLEANAKPMSLTQGPDAWDVLESVKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETMDLSLRIKLAIQHCLERYEPRLKQVLVRADSDHFNPLTLRFHIVASINCDALHKKVQFSLLLDQNRKYRVF |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9880 | - | - |
Protein sequence: 146 a.a.
>T6CP013334 KY319183:4559-4996 [Vibrio fluvialis] [TssE]
MTYIAPEESAFGVGFFERLEANAKPMSLTQGPDAWDVLESVKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETMDLSLR
IKLAIQHCLERYEPRLKQVLVRADSDHFNPLTLRFHIVASINCDALHKKVQFSLLLDQNRKYRVF*
MTYIAPEESAFGVGFFERLEANAKPMSLTQGPDAWDVLESVKRNVSNILNTRIGGAQSAPHLGLVDFNDATLETMDLSLR
IKLAIQHCLERYEPRLKQVLVRADSDHFNPLTLRFHIVASINCDALHKKVQFSLLLDQNRKYRVF*
Nucleotide sequence: 438 bp
>T6CP013334 KY319183:4559-4996 [Vibrio fluvialis] [TssE]
ATGACTTACATTGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTCTTTGAACGTTTGGAAGCCAATGCTAAACCCATGTC
TCTGACCCAAGGGCCAGATGCATGGGATGTACTCGAATCCGTTAAGCGTAATGTGTCCAATATCCTCAATACACGAATCG
GTGGTGCTCAAAGCGCCCCGCATCTCGGGTTAGTGGATTTTAACGACGCTACTTTGGAAACCATGGACTTGTCGCTGCGC
ATCAAACTGGCGATTCAGCATTGTCTGGAACGTTATGAGCCGCGCTTAAAACAGGTACTGGTGCGTGCCGACTCGGACCA
TTTCAATCCTTTAACGCTGCGTTTCCACATTGTGGCCAGCATTAACTGCGATGCATTACACAAGAAAGTTCAGTTCAGTC
TGTTACTGGATCAAAACAGAAAGTATCGAGTGTTTTAA
ATGACTTACATTGCACCTGAAGAGAGTGCATTTGGTGTTGGCTTCTTTGAACGTTTGGAAGCCAATGCTAAACCCATGTC
TCTGACCCAAGGGCCAGATGCATGGGATGTACTCGAATCCGTTAAGCGTAATGTGTCCAATATCCTCAATACACGAATCG
GTGGTGCTCAAAGCGCCCCGCATCTCGGGTTAGTGGATTTTAACGACGCTACTTTGGAAACCATGGACTTGTCGCTGCGC
ATCAAACTGGCGATTCAGCATTGTCTGGAACGTTATGAGCCGCGCTTAAAACAGGTACTGGTGCGTGCCGACTCGGACCA
TTTCAATCCTTTAACGCTGCGTTTCCACATTGTGGCCAGCATTAACTGCGATGCATTACACAAGAAAGTTCAGTTCAGTC
TGTTACTGGATCAAAACAGAAAGTATCGAGTGTTTTAA