Detailed information of component protein


Summary

Component ID T6CP013333
Component protein type TssC
T6SS ID (Type) T6SS01028 experimental (Type i1)
Strain Vibrio fluvialis 85003
Replicon chromosome
Sequence Protein sequence (492 a.a.); Nucleotide sequence (1476 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) -
Coordinate (Strand) 3081..4556 (+)
NCBI ID 1185549745
GenBank KY319183
Uniprot ID A0A0X8LJJ1_VIBFL
KEGG ID vfl:AL536_06740
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
VipB PF05943.14 5.6e-126 65..364
VipB_2 PF18945.2 1.2e-44 377..488
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-491 MSTTETVLERPQLAEGSLLDEIMAQTRIAPSEEGYDVAKKGVAAFIENLIGGNQLDEAVNKSLVDQMLVELDKKISAQMDEILHDEKYQQMESAWRGLKLFVDRTDFRENNKVDLLHVTKEELLEDFEFAPETTQSGLYKHVYSSGYGQFGGEPTGAIIGNFAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPQFFGIDSFEELPNIKDIKSTFESPKYTKWRALRESEDARYIGLTAPRFLLRVPYDPTENPIKSFNYSENVSQSHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGALQSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKAKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHYVKVLQREQIGAWKERQDLERELNAWIKQFVADQENPPADVRSRRPLRAAKIEVMDVEGNPGWYQVSLAVRPHFKYMGANFELSLVGRLDQA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9931 - -


  Protein sequence: 492 a.a.    

>T6CP013333 KY319183:3081-4556 [Vibrio fluvialis] [TssC]
MSTTETVLERPQLAEGSLLDEIMAQTRIAPSEEGYDVAKKGVAAFIENLIGGNQLDEAVNKSLVDQMLVELDKKISAQMD
EILHDEKYQQMESAWRGLKLFVDRTDFRENNKVDLLHVTKEELLEDFEFAPETTQSGLYKHVYSSGYGQFGGEPTGAIIG
NFAFTPSTPDMKLLQYMGALGAMAHAPFISSVGPQFFGIDSFEELPNIKDIKSTFESPKYTKWRALRESEDARYIGLTAP
RFLLRVPYDPTENPIKSFNYSENVSQSHEHYLWGNTAFAFATRLTDSFAKYRWCPNIIGPQSGGAVEDLPVHVFESMGAL
QSKIPTEVLITDRKEFELAEEGFIALTMRKGSDNAAFFSANSIQKAKIFPNTKEGKEAETNYKLGTQLPYMMIINRLAHY
VKVLQREQIGAWKERQDLERELNAWIKQFVADQENPPADVRSRRPLRAAKIEVMDVEGNPGWYQVSLAVRPHFKYMGANF
ELSLVGRLDQA*

  Nucleotide sequence: 1476 bp    

>T6CP013333 KY319183:3081-4556 [Vibrio fluvialis] [TssC]
ATGTCTACTACTGAAACGGTACTGGAAAGACCGCAGCTGGCTGAAGGAAGCCTGCTGGACGAAATTATGGCGCAAACCCG
CATCGCTCCAAGCGAAGAAGGGTACGATGTTGCGAAAAAAGGTGTTGCAGCATTTATTGAAAATCTGATTGGTGGCAACC
AGTTAGATGAAGCTGTGAATAAATCTCTGGTCGATCAGATGTTGGTTGAACTGGACAAAAAAATCAGCGCGCAGATGGAT
GAAATTCTCCACGACGAGAAATACCAGCAAATGGAATCGGCTTGGCGTGGCTTGAAACTGTTCGTTGATCGTACCGATTT
CCGCGAAAATAACAAAGTTGATCTGCTGCACGTCACCAAAGAAGAGCTGCTGGAAGACTTTGAATTTGCACCAGAAACAA
CTCAATCTGGCTTATACAAACACGTTTACTCCTCAGGTTATGGTCAGTTTGGTGGTGAACCAACCGGCGCTATCATTGGC
AACTTCGCTTTCACGCCATCAACACCGGACATGAAACTGCTGCAATACATGGGCGCATTAGGCGCAATGGCGCACGCACC
TTTTATCTCTAGTGTTGGCCCGCAATTCTTTGGCATCGATTCTTTTGAAGAGCTGCCAAACATCAAAGACATCAAGTCTA
CGTTTGAAAGCCCGAAATACACCAAATGGCGTGCACTGCGTGAGTCGGAAGATGCACGTTACATTGGCCTGACGGCGCCT
CGTTTCCTGCTGCGTGTTCCTTATGACCCAACAGAGAACCCAATCAAATCATTCAACTATTCAGAGAACGTGAGCCAATC
GCACGAGCATTACCTATGGGGTAATACGGCGTTTGCATTCGCAACTCGTTTGACAGATAGCTTCGCGAAATACCGTTGGT
GTCCAAACATTATCGGCCCACAAAGTGGCGGTGCGGTTGAAGATCTGCCGGTACACGTATTTGAATCGATGGGCGCGCTG
CAAAGCAAGATCCCAACGGAAGTGCTGATCACTGACCGTAAAGAGTTTGAACTGGCAGAAGAAGGTTTCATTGCTCTGAC
CATGCGTAAGGGCAGCGACAACGCCGCATTCTTCTCGGCAAACTCCATTCAGAAAGCCAAGATCTTCCCGAACACCAAAG
AAGGCAAAGAAGCAGAAACCAACTACAAGTTGGGTACGCAACTGCCTTACATGATGATCATCAACCGCTTGGCGCATTAC
GTGAAAGTGCTGCAGCGTGAACAGATTGGTGCTTGGAAAGAGCGTCAGGATCTGGAACGTGAGCTGAACGCTTGGATCAA
GCAATTCGTTGCCGATCAGGAAAACCCACCAGCAGACGTACGCAGCCGTCGTCCACTTCGCGCCGCGAAAATCGAGGTGA
TGGACGTGGAAGGCAATCCAGGTTGGTACCAAGTTTCTCTGGCTGTTCGTCCGCACTTTAAGTACATGGGTGCGAACTTC
GAACTGTCGCTGGTAGGCCGTCTGGATCAAGCATAA