SecReT6, T6SS database

Detailed information of component protein

Summary

Component ID	T6CP013332
Component protein type	TssB
T6SS ID (Type)	T6SS01028 (Type i1)
Strain	Vibrio fluvialis 85003
Replicon	chromosome
Sequence	Protein sequence (170 a.a.); Nucleotide sequence (510 bp)
Reference	[1] Huang Y, Du P, Zhao M, et al. Functional Characterization and Conditional Regulation of the Type VI Secretion System in Vibrio fluvialis. Front Microbiol. 2017 Mar 30;8:528. doi: 10.3389/fmicb.2017.00528. eCollection 2017. PMID: 28424671

Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene)	-
Coordinate (Strand)	2525..3034 (+)
NCBI ID	ARK19364.1
GenBank	KY319183
Uniprot ID	-
KEGG ID	-
PDB ID	-

Pfam domain hit(s)

Domain	Pfam ID	E-value	Aligned region
T6SS_VipA	PF05591.14	1.1e-56	6..157

Transmembrane helices

Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction	Region	Sequence
Outside	1-169	MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHSEETPVEERSTVSVDKNNFEAVMRESNLKLTTTVKNKLGEDENADLPVELSFKSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRESLQDLLNSEESREKLLAELSLVSESEEQTQA

Signal peptides

Signal peptides and corresponding cleavage sites are predicted using SignalP 5.0 software.

Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).

Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).

Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).

Prediction	Probability	Cleavage site	Signal peptide sequence
Other	0.9852	-	-

Protein sequence: 170 a.a.

						>T6CP013332 KY319183:2525-3034 [Vibrio fluvialis] [TssB]
MSKEGSVAPKERINIKYIPATGDAQAEVELPLKTLVVGDFKGHSEETPVEERSTVSVDKNNFEAVMRESNLKLTTTVKNK
LGEDENADLPVELSFKSLADFSPDSVASQVPELKKLIELREALVALKGPLGNIPAFRESLQDLLNSEESREKLLAELSLV
SESEEQTQA*					

Nucleotide sequence: 510 bp

						>T6CP013332 KY319183:2525-3034 [Vibrio fluvialis] [TssB]
ATGTCTAAAGAAGGAAGTGTAGCTCCTAAAGAGCGCATTAATATTAAGTATATTCCTGCGACTGGGGATGCACAGGCTGA
AGTGGAATTGCCATTAAAAACCTTAGTGGTTGGTGATTTCAAAGGCCATTCAGAAGAGACGCCAGTAGAAGAGCGCTCAA
CCGTTTCTGTGGATAAGAATAACTTTGAAGCTGTAATGCGTGAAAGCAATCTCAAACTGACGACAACAGTGAAGAACAAA
CTGGGTGAAGATGAAAACGCCGATCTACCGGTGGAACTGAGCTTCAAATCCCTTGCGGATTTCTCCCCGGATTCTGTGGC
TTCGCAAGTTCCTGAATTGAAAAAATTGATTGAGTTACGTGAGGCGCTGGTGGCACTGAAAGGTCCGCTGGGCAACATTC
CTGCGTTCCGTGAGAGCTTGCAAGATCTGCTGAACTCGGAAGAGTCGCGCGAGAAACTGCTGGCAGAACTCAGTCTTGTT
AGTGAGTCAGAAGAGCAAACTCAAGCCTAA					