Detailed information of component protein


Summary

Component ID T6CP013102
Component protein type TssK
T6SS ID (Type) T6SS01295 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (454 a.a.); Nucleotide sequence (1362 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_5515
Coordinate (Strand) 2518791..2520152 (+)
NCBI ID 772957881
GenBank CP009537
Uniprot ID Q63MW8_BURPS
KEGG ID bps:BPSS0530
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VasE PF05936.14 8e-118 21..446
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-453 MSSLPVGPVAWSDGMLIETQHFQQLERHLAHQASLRLGQTSNHGWGFTLLDLDQDGLGLGRLGLRHARGVFQDGTAFSLPSDDPLPPPLETELAQAGDIACLALQAARTGGPEMAFGDVELASRYRAVSTEVPDLAVGLDAPGTPRRLTIETGQLVTRLCWKSQLRSDEVALPIARVAGRNASRTVSLDPRFIPPLLDTRAHLVLRSLIDELQSTLRVRLASTSAQRVLSTGGGVADLIELLLRQAIAEYRMRLANLDAFDPLPPAMLYHELVGLLGRLSVLPGVDEELADRELGYDHDDLQTSFEPLAMMLRQALARVIETPVLPLRFEDRGDQVHICIVDKQWNLKKLIFAFSAAMPAEKLRQLLPQQTKLGAVEQIQKLVDLQLPGARLNALPNPPRQIPYYAQSTYFEVESTDPFWKQTLAGSAMALRIVGDFPDLRFEAWGLRDGKVA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9786 - -


  Protein sequence: 454 a.a.    

>T6CP013102 CP009537:2518791-2520152 [Burkholderia pseudomallei K96243] [TssK]
MSSLPVGPVAWSDGMLIETQHFQQLERHLAHQASLRLGQTSNHGWGFTLLDLDQDGLGLGRLGLRHARGVFQDGTAFSLP
SDDPLPPPLETELAQAGDIACLALQAARTGGPEMAFGDVELASRYRAVSTEVPDLAVGLDAPGTPRRLTIETGQLVTRLC
WKSQLRSDEVALPIARVAGRNASRTVSLDPRFIPPLLDTRAHLVLRSLIDELQSTLRVRLASTSAQRVLSTGGGVADLIE
LLLRQAIAEYRMRLANLDAFDPLPPAMLYHELVGLLGRLSVLPGVDEELADRELGYDHDDLQTSFEPLAMMLRQALARVI
ETPVLPLRFEDRGDQVHICIVDKQWNLKKLIFAFSAAMPAEKLRQLLPQQTKLGAVEQIQKLVDLQLPGARLNALPNPPR
QIPYYAQSTYFEVESTDPFWKQTLAGSAMALRIVGDFPDLRFEAWGLRDGKVA*

  Nucleotide sequence: 1362 bp    

>T6CP013102 CP009537:2518791-2520152 [Burkholderia pseudomallei K96243] [TssK]
ATGAGTAGTCTGCCGGTAGGACCGGTCGCGTGGAGCGACGGCATGCTGATCGAGACGCAGCACTTCCAGCAGCTCGAGCG
GCATCTCGCGCATCAGGCCTCGCTGCGGCTCGGTCAGACGTCGAATCACGGCTGGGGCTTCACGCTGCTCGATCTCGACC
AGGACGGCCTGGGGCTCGGCCGGCTCGGGCTGCGCCACGCGCGCGGCGTGTTCCAGGACGGCACCGCGTTCTCGCTGCCG
TCGGACGATCCGCTGCCGCCGCCGCTGGAAACCGAGCTCGCGCAGGCGGGCGACATCGCGTGCCTCGCGCTGCAGGCCGC
GCGCACGGGCGGCCCGGAGATGGCGTTCGGCGACGTCGAGCTGGCGTCGCGCTATCGCGCGGTGTCGACCGAGGTGCCGG
ATCTCGCGGTCGGGCTCGACGCGCCCGGCACGCCGCGGCGCCTGACGATCGAGACGGGCCAGCTCGTCACGCGCCTGTGC
TGGAAGTCGCAGCTGCGCTCGGACGAGGTCGCGCTGCCGATCGCGCGCGTGGCGGGGCGCAACGCGAGCCGCACGGTGTC
GCTGGATCCGCGCTTCATTCCGCCGCTGCTCGACACGCGCGCGCACCTGGTGCTGCGCTCGCTGATCGACGAGCTGCAGA
GCACGCTGCGCGTGCGGCTCGCGAGCACGTCCGCGCAGCGCGTGCTGTCGACGGGCGGGGGCGTGGCCGATCTGATCGAG
CTGCTGCTGCGCCAGGCGATCGCCGAGTACCGGATGCGCTTGGCGAACCTCGACGCGTTCGATCCGCTGCCGCCGGCGAT
GCTGTATCACGAGCTGGTCGGCCTGCTCGGGCGGCTGAGCGTGCTGCCGGGCGTCGACGAGGAACTGGCCGACCGCGAGC
TCGGCTACGACCACGACGATCTGCAGACGAGCTTCGAGCCGCTCGCGATGATGCTGCGCCAGGCGCTCGCGCGCGTGATC
GAGACGCCGGTGCTGCCGCTGCGCTTCGAGGATCGCGGCGATCAGGTGCACATCTGCATCGTCGACAAGCAGTGGAACCT
GAAGAAACTGATTTTTGCGTTTTCGGCCGCGATGCCGGCGGAGAAGCTGCGGCAACTGTTGCCGCAGCAGACGAAGCTGG
GCGCCGTCGAGCAGATCCAGAAGCTCGTGGACCTGCAACTGCCGGGCGCGCGGCTGAACGCGCTGCCCAATCCCCCGCGC
CAGATTCCCTACTACGCCCAAAGCACGTACTTCGAAGTGGAATCGACCGATCCGTTCTGGAAGCAGACCCTCGCCGGCTC
GGCGATGGCGCTGCGCATCGTCGGCGATTTCCCCGATCTTCGCTTCGAAGCCTGGGGGCTGAGAGACGGCAAGGTGGCGT
GA