Detailed information of component protein
Summary
| Component ID | T6CP013098 |
| Component protein type | TssG |
| T6SS ID (Type) | T6SS01295  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (330 a.a.); Nucleotide sequence (990 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AQ15_5506 |
| Coordinate (Strand) | 2505156..2506145 (+) |
| NCBI ID | 772958337 |
| GenBank | CP009537 |
| Uniprot ID | Q63MX7_BURPS |
| KEGG ID | bps:BPSS0521 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_TssG | PF06996.13 | 7.5e-56 | 14..311 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-329 | MTPLERVSRALTPRRTFFELMRRVEALQRRHDGRSARKRRMPKWLRIEQPAQMHFASTEVERVQVTLARFVEDDDHPQVTVAQRHFGLFAPYGPLPLHVTEHAMQEKRFERNAAFERFVNVACGDLAWLHYSAWSSMHPVLGYERARNPFVERVTALADACRAQQDDGEPYGRHALACRRAFPGIYCAPRRSLADLQRLLRAYFGVALQVVPRHGRWVPVPAAASHARRLGGWRLGARIWDVQHSIEIVVGPIEADEFYRWQRRAAAVMALSAVVTDFVDGRIYPVIKVQVWTRPELAGRVGCMRVGVDAWSRPNRALRTLTVFESFRD |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9584 | - | - |
Protein sequence: 330 a.a.
>T6CP013098 CP009537:2505156-2506145 [Burkholderia pseudomallei K96243] [TssG]
MTPLERVSRALTPRRTFFELMRRVEALQRRHDGRSARKRRMPKWLRIEQPAQMHFASTEVERVQVTLARFVEDDDHPQVT
VAQRHFGLFAPYGPLPLHVTEHAMQEKRFERNAAFERFVNVACGDLAWLHYSAWSSMHPVLGYERARNPFVERVTALADA
CRAQQDDGEPYGRHALACRRAFPGIYCAPRRSLADLQRLLRAYFGVALQVVPRHGRWVPVPAAASHARRLGGWRLGARIW
DVQHSIEIVVGPIEADEFYRWQRRAAAVMALSAVVTDFVDGRIYPVIKVQVWTRPELAGRVGCMRVGVDAWSRPNRALRT
LTVFESFRD*
MTPLERVSRALTPRRTFFELMRRVEALQRRHDGRSARKRRMPKWLRIEQPAQMHFASTEVERVQVTLARFVEDDDHPQVT
VAQRHFGLFAPYGPLPLHVTEHAMQEKRFERNAAFERFVNVACGDLAWLHYSAWSSMHPVLGYERARNPFVERVTALADA
CRAQQDDGEPYGRHALACRRAFPGIYCAPRRSLADLQRLLRAYFGVALQVVPRHGRWVPVPAAASHARRLGGWRLGARIW
DVQHSIEIVVGPIEADEFYRWQRRAAAVMALSAVVTDFVDGRIYPVIKVQVWTRPELAGRVGCMRVGVDAWSRPNRALRT
LTVFESFRD*
Nucleotide sequence: 990 bp
>T6CP013098 CP009537:2505156-2506145 [Burkholderia pseudomallei K96243] [TssG]
ATGACGCCGCTCGAGCGCGTGAGCCGGGCGCTGACGCCGCGCCGCACGTTCTTCGAGCTGATGCGGCGCGTCGAGGCGCT
GCAGCGCAGGCACGACGGGCGTTCGGCGCGCAAGCGCCGGATGCCGAAGTGGCTGCGCATCGAGCAGCCGGCGCAGATGC
ACTTCGCGAGCACGGAAGTCGAGCGCGTGCAGGTGACGCTCGCGCGCTTCGTCGAGGACGACGATCACCCGCAAGTCACG
GTGGCGCAGCGCCATTTCGGGCTGTTCGCGCCGTACGGGCCGCTGCCGCTGCACGTGACCGAGCACGCGATGCAGGAGAA
GCGCTTCGAGCGCAACGCCGCGTTCGAGCGCTTCGTAAACGTCGCGTGCGGCGATCTCGCGTGGCTGCATTACTCGGCGT
GGTCGTCGATGCATCCGGTGCTCGGCTACGAGCGCGCGCGCAATCCGTTCGTCGAGCGCGTGACGGCGCTCGCCGATGCG
TGCCGCGCGCAGCAGGACGACGGCGAGCCGTACGGGCGGCACGCGCTCGCATGCCGGCGCGCGTTTCCGGGCATCTACTG
CGCGCCGCGTCGCTCGCTGGCCGATCTGCAGCGGCTGCTGCGCGCGTACTTCGGCGTGGCGCTGCAGGTCGTGCCGCGCC
ACGGGCGCTGGGTGCCGGTGCCGGCCGCGGCGAGCCATGCGCGGCGGCTCGGCGGCTGGCGGCTGGGTGCGCGGATCTGG
GACGTGCAGCACTCGATCGAGATCGTGGTGGGGCCGATCGAGGCGGACGAGTTCTACCGGTGGCAACGCCGCGCGGCCGC
CGTGATGGCGCTGTCGGCGGTCGTGACGGATTTCGTCGACGGACGGATTTACCCCGTCATCAAGGTTCAGGTGTGGACGC
GCCCTGAACTCGCAGGAAGGGTTGGGTGCATGCGTGTCGGGGTCGACGCGTGGTCACGGCCGAATCGGGCGCTGCGCACC
TTGACTGTCTTTGAATCTTTTCGGGACTAG
ATGACGCCGCTCGAGCGCGTGAGCCGGGCGCTGACGCCGCGCCGCACGTTCTTCGAGCTGATGCGGCGCGTCGAGGCGCT
GCAGCGCAGGCACGACGGGCGTTCGGCGCGCAAGCGCCGGATGCCGAAGTGGCTGCGCATCGAGCAGCCGGCGCAGATGC
ACTTCGCGAGCACGGAAGTCGAGCGCGTGCAGGTGACGCTCGCGCGCTTCGTCGAGGACGACGATCACCCGCAAGTCACG
GTGGCGCAGCGCCATTTCGGGCTGTTCGCGCCGTACGGGCCGCTGCCGCTGCACGTGACCGAGCACGCGATGCAGGAGAA
GCGCTTCGAGCGCAACGCCGCGTTCGAGCGCTTCGTAAACGTCGCGTGCGGCGATCTCGCGTGGCTGCATTACTCGGCGT
GGTCGTCGATGCATCCGGTGCTCGGCTACGAGCGCGCGCGCAATCCGTTCGTCGAGCGCGTGACGGCGCTCGCCGATGCG
TGCCGCGCGCAGCAGGACGACGGCGAGCCGTACGGGCGGCACGCGCTCGCATGCCGGCGCGCGTTTCCGGGCATCTACTG
CGCGCCGCGTCGCTCGCTGGCCGATCTGCAGCGGCTGCTGCGCGCGTACTTCGGCGTGGCGCTGCAGGTCGTGCCGCGCC
ACGGGCGCTGGGTGCCGGTGCCGGCCGCGGCGAGCCATGCGCGGCGGCTCGGCGGCTGGCGGCTGGGTGCGCGGATCTGG
GACGTGCAGCACTCGATCGAGATCGTGGTGGGGCCGATCGAGGCGGACGAGTTCTACCGGTGGCAACGCCGCGCGGCCGC
CGTGATGGCGCTGTCGGCGGTCGTGACGGATTTCGTCGACGGACGGATTTACCCCGTCATCAAGGTTCAGGTGTGGACGC
GCCCTGAACTCGCAGGAAGGGTTGGGTGCATGCGTGTCGGGGTCGACGCGTGGTCACGGCCGAATCGGGCGCTGCGCACC
TTGACTGTCTTTGAATCTTTTCGGGACTAG