Detailed information of component protein


Summary

Component ID T6CP013092
Component protein type TssA
T6SS ID (Type) T6SS01295 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (313 a.a.); Nucleotide sequence (939 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_5500
Coordinate (Strand) 2499073..2500011 (+)
NCBI ID 772957581
GenBank CP009537
Uniprot ID Q63MY3_BURPS
KEGG ID bps:BPSS0515
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 3.1e-14 14..108
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-312 MNNDALPGHSPDLLDFDEDFIKIDAAICEYDSVGYAPQRKGESAFQWASIETGCLALLKKAKDVRVGIWHLRACIARRGLSGLADGVRSLADLMSAPVEELHPRALPDESPGETLLIHLGWLAGPQFLHQLGSSRFEDRDATLNDLIGGRAAAIVEDRDYRLRANTLVHDIQDSLSRIRESIAAAEQELNVSRALDLLSVAASRLTQAQAGGADGASVESDAPVDAPAGASAPGAQQPMAGPGGVLRSRQEVGAALDRIVEYFRVHEPSHPAPIFLSRIQRMLGAGFEEVMAELYPEAASLVAQLSRPQSSK


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9936 - -


  Protein sequence: 313 a.a.    

>T6CP013092 CP009537:2499073-2500011 [Burkholderia pseudomallei K96243] [TssA]
MNNDALPGHSPDLLDFDEDFIKIDAAICEYDSVGYAPQRKGESAFQWASIETGCLALLKKAKDVRVGIWHLRACIARRGL
SGLADGVRSLADLMSAPVEELHPRALPDESPGETLLIHLGWLAGPQFLHQLGSSRFEDRDATLNDLIGGRAAAIVEDRDY
RLRANTLVHDIQDSLSRIRESIAAAEQELNVSRALDLLSVAASRLTQAQAGGADGASVESDAPVDAPAGASAPGAQQPMA
GPGGVLRSRQEVGAALDRIVEYFRVHEPSHPAPIFLSRIQRMLGAGFEEVMAELYPEAASLVAQLSRPQSSK*

  Nucleotide sequence: 939 bp    

>T6CP013092 CP009537:2499073-2500011 [Burkholderia pseudomallei K96243] [TssA]
ATGAACAACGATGCACTCCCGGGCCATTCGCCGGATTTGCTGGATTTCGACGAAGACTTTATCAAGATCGACGCAGCCAT
CTGCGAATACGATTCCGTCGGTTACGCGCCGCAACGCAAAGGAGAGAGTGCGTTCCAGTGGGCGTCCATCGAAACGGGAT
GTCTCGCTTTGTTGAAGAAGGCGAAGGATGTCCGGGTCGGCATTTGGCATCTGCGCGCATGCATCGCGCGGCGCGGGCTG
AGCGGGCTGGCAGACGGCGTTCGATCGCTGGCCGATCTGATGAGTGCGCCCGTCGAGGAATTGCATCCTCGCGCGCTGCC
TGACGAATCGCCCGGCGAAACCCTCCTGATTCATCTCGGCTGGCTTGCGGGCCCGCAGTTCCTGCATCAGCTCGGCAGTT
CCCGGTTCGAAGACCGGGACGCAACCCTCAACGATCTGATCGGCGGGCGCGCCGCGGCGATCGTGGAGGATCGCGACTAT
CGCCTTAGAGCGAATACTCTTGTACATGACATTCAGGATTCCTTATCGCGAATTCGGGAATCGATCGCCGCGGCCGAGCA
AGAGCTCAACGTCTCGCGCGCGCTCGACCTGTTGAGCGTCGCGGCGTCTCGGCTCACGCAGGCACAAGCCGGCGGCGCGG
ACGGCGCAAGCGTCGAGAGCGACGCGCCGGTCGATGCGCCGGCCGGCGCGTCCGCGCCCGGCGCGCAGCAGCCGATGGCG
GGGCCGGGCGGCGTGTTGAGGTCGAGACAGGAGGTCGGCGCGGCGCTCGATCGGATCGTGGAGTACTTCCGCGTGCACGA
GCCGAGCCATCCGGCGCCGATCTTCCTGTCGCGGATTCAACGAATGCTGGGGGCGGGTTTCGAGGAAGTGATGGCGGAGC
TCTATCCCGAGGCGGCATCTCTCGTGGCCCAACTGAGCCGGCCGCAGAGTTCCAAGTAA