Detailed information of component protein


Summary

Component ID T6CP013090
Component protein type TssA
T6SS ID (Type) T6SS01294 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (382 a.a.); Nucleotide sequence (1146 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_5141
Coordinate (Strand) 2037259..2038404 (+)
NCBI ID 772956998
GenBank CP009537
Uniprot ID Q63NW8_BURPS
KEGG ID bps:BPSS0180
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 8e-32 23..148
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-381 MTPSRKPAGRAAAARTPKPDGWMAPVDAAAPCGADLEYDPEFVVLAAKVAPRAEAQYGDFVGSPEPVNWSDVERDCRRLMMRSKDMRLAVLFARSRTRLAGATGLAEGIGLLAAWLAAFPDAIHPQADVDADRDAALEIRRNALQALTDADGLLADVREIALTRSSATRLQVRDVERAFAQPRPGDALAPESVVRQLDDLHAQQPETLAGFGDALAGLAAIDAWSGEHLGDYAPDLSALDALLRRIAGANARGDRAEAEPIAPAEADAPPASEAAAAHAHAHAHAHAHAHAHAHASPPRRREPAAQALAAAIAGEPAAQPVDRYAARELIRQARQWFEQHEPSSPIPILLRRAEHFVGKRYADVVQAIPAELLALWSADET


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.8443 - -


  Protein sequence: 382 a.a.    

>T6CP013090 CP009537:2037259-2038404 [Burkholderia pseudomallei K96243] [TssA]
MTPSRKPAGRAAAARTPKPDGWMAPVDAAAPCGADLEYDPEFVVLAAKVAPRAEAQYGDFVGSPEPVNWSDVERDCRRLM
MRSKDMRLAVLFARSRTRLAGATGLAEGIGLLAAWLAAFPDAIHPQADVDADRDAALEIRRNALQALTDADGLLADVREI
ALTRSSATRLQVRDVERAFAQPRPGDALAPESVVRQLDDLHAQQPETLAGFGDALAGLAAIDAWSGEHLGDYAPDLSALD
ALLRRIAGANARGDRAEAEPIAPAEADAPPASEAAAAHAHAHAHAHAHAHAHAHASPPRRREPAAQALAAAIAGEPAAQP
VDRYAARELIRQARQWFEQHEPSSPIPILLRRAEHFVGKRYADVVQAIPAELLALWSADET*

  Nucleotide sequence: 1146 bp    

>T6CP013090 CP009537:2037259-2038404 [Burkholderia pseudomallei K96243] [TssA]
ATGACCCCCAGCAGAAAACCGGCCGGCAGGGCGGCTGCCGCGCGTACGCCGAAGCCCGACGGCTGGATGGCGCCCGTCGA
TGCGGCCGCGCCGTGCGGAGCGGACCTTGAATACGATCCCGAGTTCGTCGTGCTCGCGGCGAAGGTCGCGCCGCGCGCCG
AAGCGCAGTACGGGGACTTCGTCGGCTCGCCGGAGCCGGTGAACTGGAGCGACGTCGAGCGCGACTGCCGACGGCTGATG
ATGCGCAGCAAGGACATGCGCCTCGCGGTGCTGTTCGCGCGCAGCCGCACGCGGCTTGCCGGCGCGACCGGGCTCGCGGA
AGGCATTGGCTTGCTGGCCGCGTGGCTCGCCGCGTTTCCCGATGCGATTCATCCGCAAGCCGACGTCGACGCGGACCGCG
ACGCGGCGCTCGAGATCCGGCGCAACGCGCTGCAGGCGCTGACCGATGCCGACGGGCTGCTGGCGGACGTGCGCGAGATC
GCGCTGACCCGCTCGAGCGCGACGCGCCTGCAGGTGCGCGACGTGGAACGCGCGTTCGCGCAACCGCGGCCCGGCGATGC
GCTCGCGCCGGAATCGGTCGTGCGCCAGCTCGACGATTTGCACGCGCAGCAGCCGGAGACGCTCGCGGGCTTCGGCGATG
CGCTCGCGGGGCTGGCCGCGATCGACGCCTGGAGCGGCGAGCATCTCGGCGATTATGCGCCGGACCTGTCGGCGCTCGAT
GCGCTGCTGCGCCGGATCGCGGGCGCGAACGCGCGCGGCGATCGCGCGGAGGCCGAGCCGATCGCGCCGGCCGAAGCCGA
TGCGCCGCCAGCGAGCGAGGCGGCGGCCGCGCACGCGCACGCGCACGCGCACGCACACGCACACGCACACGCGCACGCAC
ACGCATCGCCGCCGCGGCGGCGCGAGCCCGCGGCGCAGGCACTCGCGGCTGCCATTGCGGGCGAACCGGCCGCGCAGCCG
GTGGATCGTTACGCGGCGCGCGAGCTGATCCGGCAGGCGCGCCAGTGGTTCGAGCAGCACGAGCCGAGCAGCCCGATTCC
GATTCTGCTCAGGCGCGCGGAGCATTTCGTCGGCAAGCGCTATGCGGATGTGGTGCAGGCGATTCCCGCCGAGCTGCTCG
CGCTGTGGAGCGCGGACGAAACCTGA