Detailed information of component protein


Summary

Component ID T6CP013089
Component protein type TssG
T6SS ID (Type) T6SS01294 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (362 a.a.); Nucleotide sequence (1086 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_5140
Coordinate (Strand) 2036177..2037262 (+)
NCBI ID 772958876
GenBank CP009537
Uniprot ID UPI0002D592BC
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 8.6e-95 26..324
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-361 MARDMTQAAVADTALSPQALARLRAEPWRYGFLALLRRIGADARIDPIGKARRPQAEPFRLGQQPSLAFAPREIASVGDANGRLKVRLFGLGMLGPNGPLPIHVTEIARDREESRRDPTLGNFLDIFHHRYLTLLYRAWASAQAVAGLDRPDDERFSFYVASLAGQDLDEVGAQPLPAHARLSASPHLVREARNADGLRMTLERYFGVPVTLEENVFHWIAVDPLEHSRLGRPGDASTMAAGALLGELVPDRQHKFRLVFGPLDIDAYLRFTPRGEDLPRLVEWVRAFVGYEFEWELELRIKPNGAPPAVMGGPHQLGWSGWLGRSPSGEPVTGMRFEPEHYAHGFARGTARDTRGMRGER


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9451 - -


  Protein sequence: 362 a.a.    

>T6CP013089 CP009537:2036177-2037262 [Burkholderia pseudomallei K96243] [TssG]
MARDMTQAAVADTALSPQALARLRAEPWRYGFLALLRRIGADARIDPIGKARRPQAEPFRLGQQPSLAFAPREIASVGDA
NGRLKVRLFGLGMLGPNGPLPIHVTEIARDREESRRDPTLGNFLDIFHHRYLTLLYRAWASAQAVAGLDRPDDERFSFYV
ASLAGQDLDEVGAQPLPAHARLSASPHLVREARNADGLRMTLERYFGVPVTLEENVFHWIAVDPLEHSRLGRPGDASTMA
AGALLGELVPDRQHKFRLVFGPLDIDAYLRFTPRGEDLPRLVEWVRAFVGYEFEWELELRIKPNGAPPAVMGGPHQLGWS
GWLGRSPSGEPVTGMRFEPEHYAHGFARGTARDTRGMRGER*

  Nucleotide sequence: 1086 bp    

>T6CP013089 CP009537:2036177-2037262 [Burkholderia pseudomallei K96243] [TssG]
ATGGCGCGCGACATGACGCAGGCGGCCGTTGCCGACACGGCGCTGTCGCCGCAAGCGCTCGCGCGGCTGCGCGCCGAACC
GTGGCGCTATGGGTTCCTCGCGCTGCTGCGCCGCATCGGCGCGGACGCGCGCATCGATCCGATCGGCAAGGCGAGGCGCC
CGCAGGCGGAGCCGTTTCGCCTCGGCCAGCAGCCGAGCCTCGCGTTCGCGCCGCGCGAGATCGCCAGCGTCGGCGACGCG
AACGGGCGGCTCAAGGTGCGGCTGTTCGGGCTCGGGATGCTGGGGCCGAACGGGCCGCTGCCGATCCACGTGACGGAGAT
CGCGCGCGATCGCGAGGAGAGCCGGCGCGATCCGACGCTCGGCAATTTTCTCGATATCTTCCATCATCGCTATCTGACGC
TGCTGTATCGCGCGTGGGCGTCGGCGCAGGCGGTGGCCGGCCTCGATCGTCCGGACGACGAACGGTTTTCGTTCTACGTC
GCGAGCCTCGCCGGCCAGGATCTCGACGAGGTCGGCGCGCAGCCGCTGCCCGCGCACGCGCGGCTGTCCGCCTCGCCGCA
TCTGGTGCGCGAGGCGCGCAACGCGGACGGCCTGCGAATGACGCTCGAACGTTACTTCGGCGTGCCGGTGACGCTGGAGG
AAAACGTATTTCACTGGATCGCCGTCGATCCGCTCGAGCACAGCCGGCTCGGCCGGCCCGGCGACGCATCGACGATGGCC
GCGGGCGCGCTGCTCGGCGAGCTGGTGCCGGATCGGCAGCACAAGTTCCGGCTCGTGTTCGGGCCGCTCGACATCGACGC
CTATCTGCGCTTCACGCCGCGGGGCGAGGATCTGCCGCGGCTCGTCGAATGGGTGCGGGCGTTCGTCGGCTACGAGTTCG
AGTGGGAGCTCGAGTTGCGGATCAAGCCGAACGGCGCGCCGCCCGCCGTGATGGGCGGCCCGCATCAACTCGGCTGGTCG
GGCTGGCTCGGCCGCTCGCCGTCCGGCGAGCCGGTGACGGGCATGCGTTTCGAACCCGAGCACTATGCGCACGGGTTCGC
GCGCGGCACGGCTCGCGACACGCGCGGCATGCGAGGTGAACGATGA