Detailed information of component protein


Summary

Component ID T6CP013088
Component protein type TssF
T6SS ID (Type) T6SS01294 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (626 a.a.); Nucleotide sequence (1878 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_5139
Coordinate (Strand) 2034300..2036177 (+)
NCBI ID 772957813
GenBank CP009537
Uniprot ID UPI0002EBF28A
KEGG ID -
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssF PF05947.14 5.4e-230 2..622
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-625 MLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARMQIKLDAEFPRFTGRLLEVLYPNYVAPTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARVPAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPAGAQVRGALRLRLRTTGNMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVDALAHEGLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIVVLLEQSPERLADVVDASRFALFCTPVINLFPRHMDRIELSSGQTECHLVPARLAPLDYEVFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRLVSDFARRYGTRTPYVGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGLIRAPSAPKAPYAEREIAWRLIRQLNFNYLPLDELDHRAGGQGLRGLLRLFLAGDEADSRRQVESLVGVKTRPVTRKLPGAGPLVFGRGVECALSVDETGFSGVSPYLFGLVLEHYLARHVSINVFTQTELNSIQRGRIARWPVRMGARGGA


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9929 - -


  Protein sequence: 626 a.a.    

>T6CP013088 CP009537:2034300-2036177 [Burkholderia pseudomallei K96243] [TssF]
MLDYYNQELIYMRELGAEFARAHPKIARRLGMQAGEVADPYVERLIESFCFMAARMQIKLDAEFPRFTGRLLEVLYPNYV
APTPSMAVARLYPSRTEGNLAQGFRVARGTAFAARVPAGEKTACRFRSGQDVTLYPLEIADARLTGIPPDIPALDRYVPA
GAQVRGALRLRLRTTGNMRIADLRGLDRLPLYLAGDAQVASHLFELLHVAGVATLTAAPGEFAAPGRPPAAVTVDALAHE
GLGADEGLLPLTWAKFHGHNLLHEYFACPERFYFVALTGLEEGLRRIAGSEVEIVVLLEQSPERLADVVDASRFALFCTP
VINLFPRHMDRIELSSGQTECHLVPARLAPLDYEVFSVEAMYGQVAATSAELEFRPLYQTLNDDESNYGRYFSTRRERRL
VSDFARRYGTRTPYVGTEMFVSLVDQNEAPYSEDIRYLSVDALVTNRDLPSLVPRDGVRDLTAIESAPIDSVGLIRAPSA
PKAPYAEREIAWRLIRQLNFNYLPLDELDHRAGGQGLRGLLRLFLAGDEADSRRQVESLVGVKTRPVTRKLPGAGPLVFG
RGVECALSVDETGFSGVSPYLFGLVLEHYLARHVSINVFTQTELNSIQRGRIARWPVRMGARGGA*

  Nucleotide sequence: 1878 bp    

>T6CP013088 CP009537:2034300-2036177 [Burkholderia pseudomallei K96243] [TssF]
TTGCTCGACTACTACAACCAGGAACTGATCTACATGCGCGAGCTCGGCGCCGAGTTCGCGCGCGCGCACCCGAAGATTGC
GCGGCGCCTCGGAATGCAGGCGGGCGAAGTGGCCGATCCGTACGTCGAGCGGCTGATCGAATCGTTCTGCTTTATGGCCG
CGCGCATGCAGATCAAGCTCGATGCGGAATTTCCGCGCTTCACCGGCCGCCTGCTCGAGGTGCTCTATCCGAACTATGTC
GCGCCGACGCCGTCGATGGCGGTCGCGCGCCTGTACCCGAGCCGCACCGAAGGCAACCTCGCGCAAGGCTTTCGCGTCGC
GCGCGGCACCGCGTTTGCCGCGCGCGTGCCGGCCGGCGAGAAAACCGCGTGCCGGTTTCGCAGCGGCCAGGACGTGACGC
TCTATCCGCTCGAGATCGCCGACGCGCGGCTGACGGGGATTCCGCCGGACATCCCGGCGCTCGACCGCTACGTGCCGGCC
GGCGCGCAGGTGCGCGGCGCGCTGCGCCTGCGGCTGCGCACGACCGGCAACATGCGCATCGCCGATCTGCGGGGCCTCGA
CCGGCTGCCGCTGTATCTCGCGGGCGACGCTCAGGTGGCCTCGCACCTGTTCGAGCTGCTGCACGTGGCCGGCGTCGCGA
CGCTCACGGCCGCGCCCGGCGAGTTCGCCGCGCCAGGCCGCCCGCCCGCGGCGGTTACCGTCGACGCGCTCGCTCACGAA
GGGCTCGGCGCCGACGAGGGGCTGTTGCCGCTCACGTGGGCGAAGTTCCATGGGCACAACCTGCTGCACGAATACTTCGC
GTGCCCGGAGCGCTTCTATTTCGTCGCGCTGACGGGGCTCGAGGAAGGGTTGCGGCGCATCGCGGGCAGCGAGGTCGAAA
TCGTCGTGCTGCTCGAACAATCGCCCGAGCGGCTCGCGGACGTCGTCGACGCGTCGCGCTTCGCGCTGTTCTGCACGCCG
GTGATCAACCTGTTTCCGCGCCACATGGACCGGATCGAACTGTCGAGCGGGCAGACCGAATGCCATCTGGTGCCGGCCCG
CCTCGCGCCGCTCGACTACGAAGTATTTTCCGTCGAGGCGATGTACGGGCAGGTCGCCGCGACATCGGCCGAACTCGAGT
TCCGGCCGCTGTACCAGACGCTGAACGACGACGAGAGCAACTATGGACGCTATTTCTCGACGCGGCGCGAGCGCCGGCTC
GTGTCGGATTTCGCGCGCCGCTACGGCACGCGCACGCCGTACGTCGGCACGGAGATGTTCGTATCGCTCGTCGATCAGAA
CGAGGCGCCCTACAGCGAGGACATCCGCTATCTGTCGGTGGACGCGCTGGTGACGAACCGCGACCTGCCGAGCCTCGTGC
CGCGCGACGGCGTGCGCGACCTCACGGCGATCGAATCCGCGCCGATCGACAGCGTCGGCCTGATCCGCGCGCCGTCCGCG
CCGAAGGCGCCGTATGCGGAGCGCGAGATCGCGTGGCGGCTGATCCGCCAGTTGAACTTCAACTATCTGCCGCTCGACGA
GCTCGACCATCGCGCGGGCGGACAGGGCCTGCGCGGCCTGCTGCGGCTGTTTCTGGCGGGCGACGAGGCCGACAGCCGGC
GGCAGGTGGAAAGCCTTGTCGGCGTGAAGACGCGGCCCGTCACGCGCAAGCTGCCCGGCGCGGGCCCGCTCGTGTTCGGG
CGCGGCGTCGAGTGCGCGCTGAGCGTCGACGAAACGGGCTTCTCCGGCGTGAGCCCGTATCTGTTCGGGCTCGTGCTCGA
GCATTATCTGGCGCGGCACGTGTCGATCAACGTGTTCACGCAGACCGAGCTGAACTCGATCCAGCGCGGCCGCATCGCGC
GCTGGCCGGTGCGCATGGGCGCGCGGGGAGGCGCGTGA