Detailed information of component protein


Summary

Component ID T6CP013087
Component protein type TssE
T6SS ID (Type) T6SS01294 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (194 a.a.); Nucleotide sequence (582 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AQ15_5138
Coordinate (Strand) 2033676..2034257 (+)
NCBI ID 772956682
GenBank CP009537
Uniprot ID UPI00016AC671
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
GPW_gp25 PF04965.16 9e-20 63..167

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-193 MDAHETRADAPRNGDEARVRGEGLATPRRANTQLLPTLIDRLRDDAPQRQTEAPGGYALTRMQMRGIVQRDLAFLLNTTSIDEHIDRERHPAAAASTLNFGVPPLAGAFLASCQWAEVERIIRRVILDFEPRLIAETLVVAPSRAAGAVARPNVLAFEVRGMIRMDPYPIEFMVQSALDLETNQVNITGMRAS



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9788 - -



  Protein sequence: 194 a.a.    

>T6CP013087 CP009537:2033676-2034257 [Burkholderia pseudomallei K96243] [TssE]
MDAHETRADAPRNGDEARVRGEGLATPRRANTQLLPTLIDRLRDDAPQRQTEAPGGYALTRMQMRGIVQRDLAFLLNTTS
IDEHIDRERHPAAAASTLNFGVPPLAGAFLASCQWAEVERIIRRVILDFEPRLIAETLVVAPSRAAGAVARPNVLAFEVR
GMIRMDPYPIEFMVQSALDLETNQVNITGMRAS*

  Nucleotide sequence: 582 bp    

>T6CP013087 CP009537:2033676-2034257 [Burkholderia pseudomallei K96243] [TssE]
ATGGATGCGCATGAGACGCGCGCGGACGCGCCGCGCAACGGCGACGAGGCGCGCGTGCGCGGCGAAGGCCTCGCGACGCC
GCGCCGCGCGAACACGCAACTGCTGCCGACGCTGATCGACCGCCTGCGCGACGACGCGCCGCAACGGCAGACCGAAGCGC
CCGGCGGATATGCGCTCACGCGCATGCAGATGCGCGGCATCGTCCAGCGTGATCTCGCCTTCCTGCTCAACACGACGAGC
ATCGACGAGCACATCGATCGCGAACGCCATCCGGCCGCCGCCGCCTCGACGCTCAACTTCGGCGTGCCGCCGCTTGCCGG
CGCGTTTCTCGCGTCGTGCCAGTGGGCCGAGGTCGAACGCATCATCCGCCGCGTAATTCTCGATTTCGAGCCGCGGCTGA
TCGCCGAGACGCTCGTCGTCGCGCCGTCGCGGGCCGCCGGCGCGGTCGCGCGCCCGAACGTGCTCGCGTTCGAGGTGCGC
GGCATGATTCGTATGGATCCCTATCCGATCGAATTCATGGTGCAAAGCGCGCTCGATCTCGAAACGAACCAGGTCAACAT
CACCGGCATGCGCGCGAGCTGA