Detailed information of component protein


Summary

Component ID T6CP013083
Component protein type TssD
T6SS ID (Type) T6SS01294 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (162 a.a.); Nucleotide sequence (486 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AQ15_5132
Coordinate (Strand) 2025783..2026268 (-)
NCBI ID 772956684
GenBank CP009537
Uniprot ID Q63NX7_BURPS
KEGG ID bps:BPSS0171
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_HCP PF05638.14 7.6e-41 6..136

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-161 MAQDIFLKIDGINGESLDDSHKDEIEVLNWNWEIQQESTMHTGSGGGAGKASVKDLTFEHAIDRASPNLMKYALTGKHVDQAVLVMRKAGGNPLEYLKLTMSDVIITRVRPSGSRDDTERSRETVSLSFAKVKQEYVVQNAQGGSGGAVTTSFDIKGNKEA



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9677 - -



  Protein sequence: 162 a.a.    

>T6CP013083 CP009537:c2026268-2025783 [Burkholderia pseudomallei K96243] [TssD]
MAQDIFLKIDGINGESLDDSHKDEIEVLNWNWEIQQESTMHTGSGGGAGKASVKDLTFEHAIDRASPNLMKYALTGKHVD
QAVLVMRKAGGNPLEYLKLTMSDVIITRVRPSGSRDDTERSRETVSLSFAKVKQEYVVQNAQGGSGGAVTTSFDIKGNKE
A*

  Nucleotide sequence: 486 bp    

>T6CP013083 CP009537:c2026268-2025783 [Burkholderia pseudomallei K96243] [TssD]
ATGGCGCAGGATATTTTTCTGAAGATCGACGGCATCAACGGTGAATCCCTCGACGACAGCCACAAGGACGAGATCGAAGT
CCTGAACTGGAACTGGGAGATTCAGCAGGAATCGACGATGCACACGGGCAGCGGCGGCGGCGCCGGCAAGGCGAGCGTGA
AGGATCTGACGTTCGAGCACGCGATCGACCGCGCGAGCCCCAACCTGATGAAGTACGCGCTGACCGGCAAGCACGTCGAT
CAGGCGGTGCTCGTGATGCGCAAGGCGGGCGGCAATCCGCTCGAATACCTGAAGCTCACGATGAGCGACGTGATCATCAC
GCGCGTGCGGCCGTCGGGCAGCCGCGACGACACCGAGCGCAGCCGCGAGACGGTATCGCTGTCGTTCGCGAAGGTGAAGC
AGGAGTATGTCGTGCAGAACGCGCAGGGCGGCAGCGGCGGCGCCGTCACGACGAGCTTCGACATCAAGGGCAACAAGGAA
GCCTGA