Detailed information of component protein
Summary
| Component ID | T6CP013077 |
| Component protein type | TssE |
| T6SS ID (Type) | T6SS01293  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (173 a.a.); Nucleotide sequence (519 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AQ15_5070 |
| Coordinate (Strand) | 1938394..1938912 (-) |
| NCBI ID | 772956528 |
| GenBank | CP009537 |
| Uniprot ID | Q63P35_BURPS |
| KEGG ID | bps:BPSS0113 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| GPW_gp25 | PF04965.16 | 1.1e-20 | 41..144 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-172 | MRHPEGRHRAAYLPSLLDRLQDDAPHALSESPDAYAPSADEMRRIVQRDLSLLLNTSNLDDEVDARRYPLVSASVVNYGVPPLAGSYLHDRNRETIERLVRTAIAHFEPRLIADSLAIRPLAAQPGASYNKLTFEISALVQWSPYPLELRIQSTFDLELNRVTLEKTTLNGN |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9896 | - | - |
Protein sequence: 173 a.a.
>T6CP013077 CP009537:c1938912-1938394 [Burkholderia pseudomallei K96243] [TssE]
MRHPEGRHRAAYLPSLLDRLQDDAPHALSESPDAYAPSADEMRRIVQRDLSLLLNTSNLDDEVDARRYPLVSASVVNYGV
PPLAGSYLHDRNRETIERLVRTAIAHFEPRLIADSLAIRPLAAQPGASYNKLTFEISALVQWSPYPLELRIQSTFDLELN
RVTLEKTTLNGN*
MRHPEGRHRAAYLPSLLDRLQDDAPHALSESPDAYAPSADEMRRIVQRDLSLLLNTSNLDDEVDARRYPLVSASVVNYGV
PPLAGSYLHDRNRETIERLVRTAIAHFEPRLIADSLAIRPLAAQPGASYNKLTFEISALVQWSPYPLELRIQSTFDLELN
RVTLEKTTLNGN*
Nucleotide sequence: 519 bp
>T6CP013077 CP009537:c1938912-1938394 [Burkholderia pseudomallei K96243] [TssE]
ATGCGGCATCCTGAAGGACGGCATCGGGCCGCCTATCTTCCGTCGCTGCTCGACCGGCTGCAAGACGACGCGCCGCACGC
GCTCAGCGAATCGCCCGATGCCTATGCGCCGAGCGCCGACGAAATGCGCCGCATCGTGCAGCGAGACCTGAGCCTGTTGC
TGAACACCAGCAATCTGGACGACGAGGTGGACGCCCGCCGCTATCCGCTCGTGTCGGCATCTGTCGTCAACTATGGCGTG
CCGCCTTTGGCGGGCAGCTATCTGCACGACCGGAACCGGGAAACGATCGAGCGCCTCGTGCGCACCGCGATCGCCCACTT
CGAGCCGCGCCTCATTGCGGACTCCTTGGCGATCAGGCCGCTCGCGGCGCAACCGGGCGCCAGCTACAACAAATTGACGT
TCGAAATCAGCGCGCTCGTGCAATGGTCGCCGTATCCGCTGGAGTTGCGCATCCAGAGCACGTTCGACCTCGAATTGAAT
CGAGTCACGCTCGAGAAGACGACGCTCAACGGAAATTGA
ATGCGGCATCCTGAAGGACGGCATCGGGCCGCCTATCTTCCGTCGCTGCTCGACCGGCTGCAAGACGACGCGCCGCACGC
GCTCAGCGAATCGCCCGATGCCTATGCGCCGAGCGCCGACGAAATGCGCCGCATCGTGCAGCGAGACCTGAGCCTGTTGC
TGAACACCAGCAATCTGGACGACGAGGTGGACGCCCGCCGCTATCCGCTCGTGTCGGCATCTGTCGTCAACTATGGCGTG
CCGCCTTTGGCGGGCAGCTATCTGCACGACCGGAACCGGGAAACGATCGAGCGCCTCGTGCGCACCGCGATCGCCCACTT
CGAGCCGCGCCTCATTGCGGACTCCTTGGCGATCAGGCCGCTCGCGGCGCAACCGGGCGCCAGCTACAACAAATTGACGT
TCGAAATCAGCGCGCTCGTGCAATGGTCGCCGTATCCGCTGGAGTTGCGCATCCAGAGCACGTTCGACCTCGAATTGAAT
CGAGTCACGCTCGAGAAGACGACGCTCAACGGAAATTGA