Detailed information of component protein


Summary

Component ID T6CP013075
Component protein type TssG
T6SS ID (Type) T6SS01293 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (350 a.a.); Nucleotide sequence (1050 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_5068
Coordinate (Strand) 1935466..1936515 (-)
NCBI ID 772958127
GenBank CP009537
Uniprot ID Q63P37_BURPS
KEGG ID bps:BPSS0111
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_TssG PF06996.13 1e-95 30..329
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-349 MTAHPPAARPIDAHSPLHPDALRAWFDPQAPWRAGFLSLLRAIAARDTRVPLPGTACLPKEEAFRIGQRPSMAFAPREIASLDVQRGRLDIQLFGLGLWGPQGPLPLHMTELAYNRAESYQDHAIAHFSNLFHHRALALFYRAWASSQATVSLDRAEHETFSFYIGSLMGTDPEEAARTHPPTHARYAACAHLVREARNPDGVAATLSHYFGVPIAVDEYVFHWIRIAPPERCLLGARAASTVMGEGALLGDMVADCQHKFRLVIGPLDLDQYLRLTPHGNDLPTLVDWVRAFVGHEYDWEIKLLVKPRAAPPARADTTHRLGYSTWLGESRDDRPVVGMVFEPEKYCS


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9660 - -


  Protein sequence: 350 a.a.    

>T6CP013075 CP009537:c1936515-1935466 [Burkholderia pseudomallei K96243] [TssG]
MTAHPPAARPIDAHSPLHPDALRAWFDPQAPWRAGFLSLLRAIAARDTRVPLPGTACLPKEEAFRIGQRPSMAFAPREIA
SLDVQRGRLDIQLFGLGLWGPQGPLPLHMTELAYNRAESYQDHAIAHFSNLFHHRALALFYRAWASSQATVSLDRAEHET
FSFYIGSLMGTDPEEAARTHPPTHARYAACAHLVREARNPDGVAATLSHYFGVPIAVDEYVFHWIRIAPPERCLLGARAA
STVMGEGALLGDMVADCQHKFRLVIGPLDLDQYLRLTPHGNDLPTLVDWVRAFVGHEYDWEIKLLVKPRAAPPARADTTH
RLGYSTWLGESRDDRPVVGMVFEPEKYCS*

  Nucleotide sequence: 1050 bp    

>T6CP013075 CP009537:c1936515-1935466 [Burkholderia pseudomallei K96243] [TssG]
ATGACGGCGCATCCGCCCGCCGCCCGGCCCATCGACGCCCACTCGCCCCTGCATCCGGACGCACTGCGGGCATGGTTCGA
TCCGCAAGCGCCGTGGCGCGCCGGCTTTCTGAGCCTGTTGCGCGCAATCGCCGCACGCGACACGCGCGTGCCCTTGCCCG
GAACGGCGTGTCTGCCGAAGGAAGAGGCGTTTCGCATCGGACAACGGCCGTCGATGGCCTTCGCGCCGCGCGAGATCGCA
TCGCTCGACGTGCAGCGCGGGCGTCTCGACATTCAGCTGTTCGGCCTCGGCCTATGGGGGCCGCAGGGGCCGTTGCCGCT
TCACATGACCGAGCTCGCGTACAACCGCGCCGAGAGCTATCAGGATCATGCGATCGCGCATTTCTCCAATCTCTTTCACC
ATCGTGCGCTCGCGTTGTTCTATCGTGCGTGGGCGTCGTCACAGGCGACCGTATCGCTCGATCGCGCCGAGCACGAAACG
TTCTCGTTCTATATCGGCAGCCTGATGGGCACCGATCCCGAAGAAGCCGCGCGTACGCACCCGCCCACGCACGCGCGGTA
CGCCGCATGCGCGCATCTCGTGCGCGAGGCGCGCAATCCGGACGGCGTGGCCGCCACGCTGTCGCATTACTTCGGCGTGC
CGATCGCCGTCGACGAATACGTCTTCCACTGGATCCGGATTGCGCCGCCGGAGCGTTGCCTGCTCGGCGCGCGCGCCGCA
TCGACCGTCATGGGCGAGGGCGCGCTGCTCGGCGACATGGTTGCCGATTGCCAGCACAAGTTCCGGCTCGTCATCGGCCC
GCTCGATCTCGACCAATATCTTCGCCTGACGCCGCACGGCAACGATCTGCCGACCCTGGTCGATTGGGTGCGCGCCTTCG
TCGGTCACGAATACGACTGGGAGATCAAGCTGCTCGTCAAGCCACGCGCCGCGCCGCCCGCCCGCGCGGATACCACGCAC
CGCCTCGGCTATTCGACCTGGCTCGGCGAATCGAGGGACGACAGGCCGGTCGTCGGCATGGTGTTCGAGCCGGAAAAATA
CTGTTCCTGA