Detailed information of component protein


Summary

Component ID T6CP013074
Component protein type TssA
T6SS ID (Type) T6SS01293 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (357 a.a.); Nucleotide sequence (1071 bp)
Reference
experimental Experimental investigation has been performed on this T6SS
External database links

Locus tag (Gene) AQ15_5067
Coordinate (Strand) 1934377..1935447 (-)
NCBI ID 772958443
GenBank CP009537
Uniprot ID Q63P38_BURPS
KEGG ID bps:BPSS0110
PDB ID -
Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
ImpA_N PF06812.14 4.6e-33 16..139
Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-356 MNATPSAAALRYADLLEPVSPDAPCGPDLEYDPAFVMLQSAIAPRKDAQYGEFVEAPQPANWAEAERDCLALLLRTKDIRLVVILMRCRIRQSGAEGLRDGLTLLNELLARYGEALHPVPFFEGERDPVVYANAIATLADPDATLADIREIPLPKASGLQLQLRDIEKALAVTRVKDALAPESASRLLKEWWNRRDKTIAALAQAQRIVADLIASTRESLGDDAPDLSGIAKLLHPFAQAQLESPYSANAAQPQGDAKPATGDAAHARAADTSAQAGDTDTQAPAAMPIAPAQPPMDRWGALAAIQATRLWFEQNEPSSPVIVLLRQSERMVGKRFSEIANAIPAELLAQWDAIDV


Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9000 - -


  Protein sequence: 357 a.a.    

>T6CP013074 CP009537:c1935447-1934377 [Burkholderia pseudomallei K96243] [TssA]
MNATPSAAALRYADLLEPVSPDAPCGPDLEYDPAFVMLQSAIAPRKDAQYGEFVEAPQPANWAEAERDCLALLLRTKDIR
LVVILMRCRIRQSGAEGLRDGLTLLNELLARYGEALHPVPFFEGERDPVVYANAIATLADPDATLADIREIPLPKASGLQ
LQLRDIEKALAVTRVKDALAPESASRLLKEWWNRRDKTIAALAQAQRIVADLIASTRESLGDDAPDLSGIAKLLHPFAQA
QLESPYSANAAQPQGDAKPATGDAAHARAADTSAQAGDTDTQAPAAMPIAPAQPPMDRWGALAAIQATRLWFEQNEPSSP
VIVLLRQSERMVGKRFSEIANAIPAELLAQWDAIDV*

  Nucleotide sequence: 1071 bp    

>T6CP013074 CP009537:c1935447-1934377 [Burkholderia pseudomallei K96243] [TssA]
ATGAATGCCACCCCATCCGCCGCCGCGCTGCGCTATGCGGATCTTCTCGAGCCCGTCTCGCCGGACGCACCCTGCGGGCC
GGACCTCGAATACGATCCGGCGTTCGTGATGCTGCAATCCGCGATCGCGCCGAGGAAAGATGCGCAATATGGCGAGTTCG
TCGAAGCGCCTCAGCCCGCGAACTGGGCGGAGGCCGAACGCGATTGCCTCGCGCTGCTGCTGCGCACGAAAGACATCCGG
CTCGTCGTGATCCTGATGCGATGCCGAATCCGCCAGAGCGGCGCGGAGGGCCTGCGCGACGGCCTCACGCTGCTCAACGA
GTTGCTCGCACGCTACGGTGAGGCACTGCACCCCGTACCGTTCTTCGAAGGCGAACGCGATCCCGTGGTCTATGCGAATG
CGATCGCCACGCTGGCGGACCCCGATGCGACGCTCGCGGATATTCGGGAAATCCCGTTGCCCAAGGCGAGCGGCCTGCAA
TTGCAGTTGCGCGACATCGAAAAGGCGCTCGCGGTGACGCGCGTGAAAGACGCACTCGCGCCCGAATCGGCCAGCCGGCT
GCTGAAGGAATGGTGGAATCGGCGCGACAAGACGATCGCGGCGCTCGCGCAAGCCCAGCGCATCGTGGCCGATCTGATCG
CGTCGACCCGCGAGTCGCTCGGCGACGACGCGCCCGACCTGTCCGGCATCGCGAAACTGCTGCATCCGTTTGCGCAAGCG
CAACTGGAATCGCCGTATTCGGCAAACGCCGCTCAACCGCAAGGCGACGCGAAGCCGGCGACCGGCGACGCCGCGCATGC
GCGCGCCGCCGATACGTCCGCCCAGGCAGGCGATACCGACACGCAAGCGCCCGCTGCGATGCCGATCGCGCCTGCCCAAC
CGCCGATGGATCGCTGGGGCGCGCTGGCGGCCATTCAGGCGACGCGCCTTTGGTTCGAGCAGAACGAGCCGAGCAGCCCG
GTGATCGTGCTGCTGCGCCAGTCGGAGCGGATGGTCGGCAAGCGCTTTTCGGAAATCGCCAATGCGATTCCCGCCGAACT
GCTCGCGCAATGGGATGCGATCGACGTCTAG