Detailed information of component protein
Summary
Component ID | T6CP013071 |
Component protein type | TssL |
T6SS ID (Type) | T6SS01293 (Type i3) |
Strain | Burkholderia pseudomallei K96243 |
Replicon | chromosome II |
Sequence | Protein sequence (434 a.a.); Nucleotide sequence (1302 bp) |
Reference |
External database links
Locus tag (Gene) | AQ15_5059 |
Coordinate (Strand) | 1919454..1920755 (+) |
NCBI ID | 772956999 |
GenBank | CP009537 |
Uniprot ID | Q63P44_BURPS |
KEGG ID | bps:BPSS0102 |
PDB ID | - |
Pfam domain hit(s)
Domain | Pfam ID | E-value | Aligned region |
---|---|---|---|
DotU | PF09850.11 | 3e-61 | 63..266 |
OmpA | PF00691.22 | 2.3e-17 | 327..425 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
Prediction | Region | Sequence |
---|---|---|
Outside | 1-244 | MNSGAFDEAAFDFLVSDEGGANVAADRARSAAKAAGAEPARDRIDASVNVQHRLDEVRAAANPLLEAATPLLRMLADMPATLDTSEAVASLRTLLVREVALFQNLCEKADLPWKHMAVVRYCLCTALDEAANRTRWGGGGVWASQSLLITYEGEVDGGEKFFLLIGRMATDPQEYVDILEILYRVLGLGFEGRYSVVADGRRHLEQIRQRLWTLITGARDAIQPELSLRWRGAEPGRLPLLRSV |
Transmembrane helix | 245-264 | PAWASGALVFLLLFGLFAFY |
Inside | 265-433 | QYRLLTERNALEARILAIAKDEPATPPQRLRLSILLKNEIARGLLTVDEDDRRSVVVFRGDAMFRSGESRVLPEIEPVLDKVAREVARVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADRIRSEGRGDAQPVAENATPAGRSRNRRVEIAVTL |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction | Probability | Cleavage site | Signal peptide sequence |
---|---|---|---|
Other | 0.9604 | - | - |
Protein sequence: 434 a.a.
>T6CP013071 CP009537:1919454-1920755 [Burkholderia pseudomallei K96243] [TssL]
MNSGAFDEAAFDFLVSDEGGANVAADRARSAAKAAGAEPARDRIDASVNVQHRLDEVRAAANPLLEAATPLLRMLADMPA
TLDTSEAVASLRTLLVREVALFQNLCEKADLPWKHMAVVRYCLCTALDEAANRTRWGGGGVWASQSLLITYEGEVDGGEK
FFLLIGRMATDPQEYVDILEILYRVLGLGFEGRYSVVADGRRHLEQIRQRLWTLITGARDAIQPELSLRWRGAEPGRLPL
LRSVPAWASGALVFLLLFGLFAFYQYRLLTERNALEARILAIAKDEPATPPQRLRLSILLKNEIARGLLTVDEDDRRSVV
VFRGDAMFRSGESRVLPEIEPVLDKVAREVARVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADR
IRSEGRGDAQPVAENATPAGRSRNRRVEIAVTL*
MNSGAFDEAAFDFLVSDEGGANVAADRARSAAKAAGAEPARDRIDASVNVQHRLDEVRAAANPLLEAATPLLRMLADMPA
TLDTSEAVASLRTLLVREVALFQNLCEKADLPWKHMAVVRYCLCTALDEAANRTRWGGGGVWASQSLLITYEGEVDGGEK
FFLLIGRMATDPQEYVDILEILYRVLGLGFEGRYSVVADGRRHLEQIRQRLWTLITGARDAIQPELSLRWRGAEPGRLPL
LRSVPAWASGALVFLLLFGLFAFYQYRLLTERNALEARILAIAKDEPATPPQRLRLSILLKNEIARGLLTVDEDDRRSVV
VFRGDAMFRSGESRVLPEIEPVLDKVAREVARVGGRVTVTGHSDNQPIRRADIPNNLVLSEKRAAYVAQILVQRGTPADR
IRSEGRGDAQPVAENATPAGRSRNRRVEIAVTL*
Nucleotide sequence: 1302 bp
>T6CP013071 CP009537:1919454-1920755 [Burkholderia pseudomallei K96243] [TssL]
ATGAATTCGGGCGCCTTTGACGAAGCCGCGTTCGATTTTCTCGTATCGGACGAAGGCGGAGCGAACGTCGCGGCCGATCG
CGCGCGATCGGCCGCGAAGGCCGCGGGCGCGGAGCCGGCGCGCGATCGGATCGACGCGTCGGTCAACGTCCAGCATCGCC
TCGACGAAGTTCGCGCGGCGGCCAATCCGCTGCTCGAAGCCGCGACGCCTTTGCTGCGGATGCTGGCGGACATGCCTGCG
ACGCTAGACACCTCCGAAGCCGTCGCGAGCCTTCGCACCCTGCTCGTGCGAGAGGTCGCGCTGTTCCAGAACTTGTGCGA
GAAGGCTGATTTGCCTTGGAAGCACATGGCGGTCGTGCGTTATTGCCTGTGCACGGCACTGGACGAGGCGGCCAATCGCA
CGCGCTGGGGCGGCGGCGGCGTATGGGCTTCGCAGAGCTTGCTGATTACATACGAAGGCGAGGTCGACGGAGGCGAGAAG
TTCTTCCTGTTGATCGGACGCATGGCGACGGATCCGCAGGAGTACGTCGATATTCTCGAGATTCTCTATCGCGTGCTGGG
TCTCGGGTTCGAAGGGCGCTACAGCGTCGTTGCGGACGGCCGGCGGCATCTCGAGCAGATTCGCCAGCGTTTGTGGACGC
TCATCACCGGCGCGCGCGACGCGATTCAGCCGGAATTGTCGCTGCGCTGGCGCGGAGCGGAGCCGGGCAGGCTTCCGCTG
TTGCGCAGCGTGCCCGCATGGGCGAGCGGTGCGCTCGTCTTCCTGCTGTTGTTCGGTCTCTTCGCGTTCTATCAGTATCG
GTTGCTCACCGAACGCAATGCGCTCGAGGCGCGCATCCTGGCGATCGCGAAGGACGAGCCGGCGACGCCACCGCAGCGTT
TGCGCCTGTCGATCCTGCTCAAGAACGAAATTGCGCGCGGTCTACTGACGGTCGACGAAGACGATAGGCGCAGCGTGGTC
GTGTTCCGCGGCGATGCGATGTTCCGCTCCGGCGAGAGCCGCGTGCTTCCCGAGATCGAGCCGGTGCTCGACAAGGTGGC
GCGGGAAGTGGCCCGCGTCGGCGGCCGGGTCACGGTCACGGGGCACTCCGACAACCAGCCGATTCGGCGCGCCGACATCC
CGAACAATCTCGTGTTGTCGGAAAAACGCGCGGCTTACGTCGCGCAAATCCTGGTCCAGCGAGGCACTCCGGCCGATCGT
ATTCGCTCGGAGGGCCGGGGCGACGCGCAGCCCGTCGCGGAAAACGCGACGCCTGCTGGCCGATCCCGCAACCGCCGCGT
CGAAATCGCGGTCACGCTGTAA
ATGAATTCGGGCGCCTTTGACGAAGCCGCGTTCGATTTTCTCGTATCGGACGAAGGCGGAGCGAACGTCGCGGCCGATCG
CGCGCGATCGGCCGCGAAGGCCGCGGGCGCGGAGCCGGCGCGCGATCGGATCGACGCGTCGGTCAACGTCCAGCATCGCC
TCGACGAAGTTCGCGCGGCGGCCAATCCGCTGCTCGAAGCCGCGACGCCTTTGCTGCGGATGCTGGCGGACATGCCTGCG
ACGCTAGACACCTCCGAAGCCGTCGCGAGCCTTCGCACCCTGCTCGTGCGAGAGGTCGCGCTGTTCCAGAACTTGTGCGA
GAAGGCTGATTTGCCTTGGAAGCACATGGCGGTCGTGCGTTATTGCCTGTGCACGGCACTGGACGAGGCGGCCAATCGCA
CGCGCTGGGGCGGCGGCGGCGTATGGGCTTCGCAGAGCTTGCTGATTACATACGAAGGCGAGGTCGACGGAGGCGAGAAG
TTCTTCCTGTTGATCGGACGCATGGCGACGGATCCGCAGGAGTACGTCGATATTCTCGAGATTCTCTATCGCGTGCTGGG
TCTCGGGTTCGAAGGGCGCTACAGCGTCGTTGCGGACGGCCGGCGGCATCTCGAGCAGATTCGCCAGCGTTTGTGGACGC
TCATCACCGGCGCGCGCGACGCGATTCAGCCGGAATTGTCGCTGCGCTGGCGCGGAGCGGAGCCGGGCAGGCTTCCGCTG
TTGCGCAGCGTGCCCGCATGGGCGAGCGGTGCGCTCGTCTTCCTGCTGTTGTTCGGTCTCTTCGCGTTCTATCAGTATCG
GTTGCTCACCGAACGCAATGCGCTCGAGGCGCGCATCCTGGCGATCGCGAAGGACGAGCCGGCGACGCCACCGCAGCGTT
TGCGCCTGTCGATCCTGCTCAAGAACGAAATTGCGCGCGGTCTACTGACGGTCGACGAAGACGATAGGCGCAGCGTGGTC
GTGTTCCGCGGCGATGCGATGTTCCGCTCCGGCGAGAGCCGCGTGCTTCCCGAGATCGAGCCGGTGCTCGACAAGGTGGC
GCGGGAAGTGGCCCGCGTCGGCGGCCGGGTCACGGTCACGGGGCACTCCGACAACCAGCCGATTCGGCGCGCCGACATCC
CGAACAATCTCGTGTTGTCGGAAAAACGCGCGGCTTACGTCGCGCAAATCCTGGTCCAGCGAGGCACTCCGGCCGATCGT
ATTCGCTCGGAGGGCCGGGGCGACGCGCAGCCCGTCGCGGAAAACGCGACGCCTGCTGGCCGATCCCGCAACCGCCGCGT
CGAAATCGCGGTCACGCTGTAA