Detailed information of component protein
Summary
| Component ID | T6CP013068 |
| Component protein type | TssD |
| T6SS ID (Type) | T6SS01293  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (161 a.a.); Nucleotide sequence (483 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AQ15_5056 |
| Coordinate (Strand) | 1916950..1917432 (+) |
| NCBI ID | 772956989 |
| GenBank | CP009537 |
| Uniprot ID | Q63P47_BURPS |
| KEGG ID | bps:BPSS0099 |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_HCP | PF05638.14 | 1.6e-38 | 6..136 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-160 | MSHDIFLKINGIDGEAEDATHKGEIEVLSWSWNVSQQSNMHLGSGGGAGKATIDDLQFEHYIDRASPNLVQYCLLGKHIDEARLVVRKAGGSPLEYIKLTMSDVLVTQVSPTGVAQDESRPRELVRLSFSRLKQEYVVQNPQGGSGGAITATFDIKKNAA |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9778 | - | - |
Protein sequence: 161 a.a.
>T6CP013068 CP009537:1916950-1917432 [Burkholderia pseudomallei K96243] [TssD]
MSHDIFLKINGIDGEAEDATHKGEIEVLSWSWNVSQQSNMHLGSGGGAGKATIDDLQFEHYIDRASPNLVQYCLLGKHID
EARLVVRKAGGSPLEYIKLTMSDVLVTQVSPTGVAQDESRPRELVRLSFSRLKQEYVVQNPQGGSGGAITATFDIKKNAA
*
MSHDIFLKINGIDGEAEDATHKGEIEVLSWSWNVSQQSNMHLGSGGGAGKATIDDLQFEHYIDRASPNLVQYCLLGKHID
EARLVVRKAGGSPLEYIKLTMSDVLVTQVSPTGVAQDESRPRELVRLSFSRLKQEYVVQNPQGGSGGAITATFDIKKNAA
*
Nucleotide sequence: 483 bp
>T6CP013068 CP009537:1916950-1917432 [Burkholderia pseudomallei K96243] [TssD]
ATGTCGCACGACATTTTCCTCAAGATCAACGGTATCGATGGCGAGGCGGAAGACGCAACCCACAAGGGCGAAATCGAGGT
CTTGAGCTGGTCGTGGAACGTCAGTCAGCAATCGAACATGCACCTGGGTTCGGGGGGCGGCGCGGGCAAGGCGACGATCG
ATGATCTGCAGTTCGAACATTACATCGATCGCGCGAGCCCGAATCTCGTTCAATACTGCTTGCTCGGCAAGCATATCGAC
GAAGCCCGGCTCGTGGTGCGTAAGGCGGGCGGCAGCCCGCTCGAATACATCAAGCTCACGATGAGCGATGTGCTCGTTAC
GCAGGTGAGCCCGACAGGCGTGGCTCAGGACGAATCGCGCCCGCGTGAGCTCGTTCGGCTGTCGTTCTCGCGCCTGAAGC
AAGAGTATGTCGTCCAGAACCCGCAGGGCGGCAGCGGCGGCGCAATCACCGCGACTTTCGACATCAAGAAGAACGCGGCG
TAA
ATGTCGCACGACATTTTCCTCAAGATCAACGGTATCGATGGCGAGGCGGAAGACGCAACCCACAAGGGCGAAATCGAGGT
CTTGAGCTGGTCGTGGAACGTCAGTCAGCAATCGAACATGCACCTGGGTTCGGGGGGCGGCGCGGGCAAGGCGACGATCG
ATGATCTGCAGTTCGAACATTACATCGATCGCGCGAGCCCGAATCTCGTTCAATACTGCTTGCTCGGCAAGCATATCGAC
GAAGCCCGGCTCGTGGTGCGTAAGGCGGGCGGCAGCCCGCTCGAATACATCAAGCTCACGATGAGCGATGTGCTCGTTAC
GCAGGTGAGCCCGACAGGCGTGGCTCAGGACGAATCGCGCCCGCGTGAGCTCGTTCGGCTGTCGTTCTCGCGCCTGAAGC
AAGAGTATGTCGTCCAGAACCCGCAGGGCGGCAGCGGCGGCGCAATCACCGCGACTTTCGACATCAAGAAGAACGCGGCG
TAA