Detailed information of component protein


Summary

Component ID T6CP013066
Component protein type TssB
T6SS ID (Type) T6SS01293 experimental (Type i3)
Strain Burkholderia pseudomallei K96243
Replicon chromosome II
Sequence Protein sequence (180 a.a.); Nucleotide sequence (540 bp)
Reference
experimental Experimental investigation has been performed on this T6SS

External database links

Locus tag (Gene) AQ15_5054
Coordinate (Strand) 1914678..1915217 (+)
NCBI ID AJX24298.1
GenBank CP009537
Uniprot ID -
KEGG ID -
PDB ID -

Pfam domain hit(s)

Domain Pfam ID E-value Aligned region
T6SS_VipA PF05591.14 2.1e-58 12..162

Transmembrane helices

  • Transmembrane helices are predicted using TMHMM 2.0 software.

Prediction                 Region     Sequence
Outside 1-179 MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPRVAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALAKAPKPVAEQAENRESKEKH



Signal peptides
  • Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
  • Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
  • Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
Prediction        Probability Cleavage site Signal peptide sequence
Other 0.9956 - -



  Protein sequence: 180 a.a.    

>T6CP013066 CP009537:1914678-1915217 [Burkholderia pseudomallei K96243] [TssB]
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPR
VAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALA
KAPKPVAEQAENRESKEKH*

  Nucleotide sequence: 540 bp    

>T6CP013066 CP009537:1914678-1915217 [Burkholderia pseudomallei K96243] [TssB]
ATGGCTATATCCAATAGCTCACAGAAATTTATCGCGCGCAATCGTGCGCCTCGCGTTCAGATCGAATATGACGTCGAGAT
TTACGGCTCCGAAAAGAAGGTCGAGCTTCCGTTCGTGATGGGCGTGCTCGCGGACCTGTCGGGCAAGCCGCTCGAGCCTC
TGCCGGCGGTCGGCGACCGCAAGTTCTTCAGCATCGATATCGACAATTTCGACGAGCGCATGAAGGCGATGAAGCCGCGT
GTCGCGTTCTCGGTGCCGAATACTCTTTCCGGCGACGGTCAATTGATGGTCGACATCACGTTCGAAAGCATGGACGACTT
TTCTCCCGCGGCGATCGCGAAGAAGGTGGATGCGTTGTCGCAATTGCTGGACGCGCGCACGCAGCTTGCCAATCTGCAGA
CCTACATGGACGGAAAGTCGGGCGCGGAGAACCTCGTGAGCAAGGTGCTCAAGGACCCCGCGCTGCTGAGCGCGCTTGCG
AAGGCGCCGAAGCCCGTGGCGGAACAGGCGGAAAACAGGGAATCGAAGGAAAAGCACTGA