Detailed information of component protein
Summary
| Component ID | T6CP013066 |
| Component protein type | TssB |
| T6SS ID (Type) | T6SS01293  (Type i3) |
| Strain | Burkholderia pseudomallei K96243 |
| Replicon | chromosome II |
| Sequence | Protein sequence (180 a.a.); Nucleotide sequence (540 bp) |
| Reference |
Experimental investigation has been performed on this T6SSExternal database links
| Locus tag (Gene) | AQ15_5054 |
| Coordinate (Strand) | 1914678..1915217 (+) |
| NCBI ID | AJX24298.1 |
| GenBank | CP009537 |
| Uniprot ID | - |
| KEGG ID | - |
| PDB ID | - |
Pfam domain hit(s)
| Domain | Pfam ID | E-value | Aligned region |
|---|---|---|---|
| T6SS_VipA | PF05591.14 | 2.1e-58 | 12..162 |
Transmembrane helices
- Transmembrane helices are predicted using TMHMM 2.0 software.
| Prediction | Region | Sequence |
|---|---|---|
| Outside | 1-179 | MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPRVAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALAKAPKPVAEQAENRESKEKH |
Signal peptides
- Sec/SPI: "standard" secretory signal peptides transported by the Sec translocon and cleaved by Signal Peptidase I (Lep).
- Sec/SPII: lipoprotein signal peptides transported by the Sec translocon and cleaved by Signal Peptidase II (Lsp).
- Tat/SPI: Tat signal peptides transported by the Tat translocon and cleaved by Signal Peptidase I (Lep).
| Prediction | Probability | Cleavage site | Signal peptide sequence |
|---|---|---|---|
| Other | 0.9956 | - | - |
Protein sequence: 180 a.a.
>T6CP013066 CP009537:1914678-1915217 [Burkholderia pseudomallei K96243] [TssB]
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPR
VAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALA
KAPKPVAEQAENRESKEKH*
MAISNSSQKFIARNRAPRVQIEYDVEIYGSEKKVELPFVMGVLADLSGKPLEPLPAVGDRKFFSIDIDNFDERMKAMKPR
VAFSVPNTLSGDGQLMVDITFESMDDFSPAAIAKKVDALSQLLDARTQLANLQTYMDGKSGAENLVSKVLKDPALLSALA
KAPKPVAEQAENRESKEKH*
Nucleotide sequence: 540 bp
>T6CP013066 CP009537:1914678-1915217 [Burkholderia pseudomallei K96243] [TssB]
ATGGCTATATCCAATAGCTCACAGAAATTTATCGCGCGCAATCGTGCGCCTCGCGTTCAGATCGAATATGACGTCGAGAT
TTACGGCTCCGAAAAGAAGGTCGAGCTTCCGTTCGTGATGGGCGTGCTCGCGGACCTGTCGGGCAAGCCGCTCGAGCCTC
TGCCGGCGGTCGGCGACCGCAAGTTCTTCAGCATCGATATCGACAATTTCGACGAGCGCATGAAGGCGATGAAGCCGCGT
GTCGCGTTCTCGGTGCCGAATACTCTTTCCGGCGACGGTCAATTGATGGTCGACATCACGTTCGAAAGCATGGACGACTT
TTCTCCCGCGGCGATCGCGAAGAAGGTGGATGCGTTGTCGCAATTGCTGGACGCGCGCACGCAGCTTGCCAATCTGCAGA
CCTACATGGACGGAAAGTCGGGCGCGGAGAACCTCGTGAGCAAGGTGCTCAAGGACCCCGCGCTGCTGAGCGCGCTTGCG
AAGGCGCCGAAGCCCGTGGCGGAACAGGCGGAAAACAGGGAATCGAAGGAAAAGCACTGA
ATGGCTATATCCAATAGCTCACAGAAATTTATCGCGCGCAATCGTGCGCCTCGCGTTCAGATCGAATATGACGTCGAGAT
TTACGGCTCCGAAAAGAAGGTCGAGCTTCCGTTCGTGATGGGCGTGCTCGCGGACCTGTCGGGCAAGCCGCTCGAGCCTC
TGCCGGCGGTCGGCGACCGCAAGTTCTTCAGCATCGATATCGACAATTTCGACGAGCGCATGAAGGCGATGAAGCCGCGT
GTCGCGTTCTCGGTGCCGAATACTCTTTCCGGCGACGGTCAATTGATGGTCGACATCACGTTCGAAAGCATGGACGACTT
TTCTCCCGCGGCGATCGCGAAGAAGGTGGATGCGTTGTCGCAATTGCTGGACGCGCGCACGCAGCTTGCCAATCTGCAGA
CCTACATGGACGGAAAGTCGGGCGCGGAGAACCTCGTGAGCAAGGTGCTCAAGGACCCCGCGCTGCTGAGCGCGCTTGCG
AAGGCGCCGAAGCCCGTGGCGGAACAGGCGGAAAACAGGGAATCGAAGGAAAAGCACTGA